ComBat.step2            Perform the second step of ComBat
assign.convergence      Check the convergence of the MCMC chain
assign.cv.output        Cross validation output
assign.mcmc             The Gibbs sampling algorithm to approximate the
                        joint distribution of the model parameters
assign.output           Prediction/validation output for test data
assign.preprocess       Input data preprocessing
assign.summary          Summary of the model parameters estimated by
                        the Gibbs sampling algorithm
assign.wrapper          ASSIGN All-in-one function
excludegenes            Exclude Gene List
gather_assign_results   Gather the ASSIGN results in a specific
                        directory
geneList1               Pathway signature gene sets
gfrn_geneList           Pathway Signature Gene Lists
merge_drop              Combine two data frames
optimizeGFRN            Optimize GFRN gene lists lengths
pcaplot                 Display a PCA Plot of the Data
runassignGFRN           Run optimized single pathway ASSIGN
testData1               Gene expression profiling from cancer patients
                        (test dataset)
trainingData1           Gene expression profiling from cell line
                        perturbation experiments (training dataset)
