Package	Download_score
snpStats	2195
MLInterfaces	489
genefilter	12261
BiocParallel	41480
ChromHeatMap	151
MVCClass	141
CFAssay	73
IRanges	53096
biocViews	4367
EBImage	2737
BSgenome	16551
Biobase	48842
GenomicFeatures	19655
AnnotationDbi	36124
flowCore	2884
Rgraphviz	9628
kebabs	166
goseq	1410
illuminaio	3047
clonotypeR	33
ChIPpeakAnno	1093
flagme	90
geneRecommender	92
GenomeGraphs	44
BufferedMatrixMethods	98
ontoCAT	26
AnnotationForge	2216
DEXSeq	1500
GEOmetadb	270
DFP	102
Gviz	3606
mygene	360
CoCiteStats	94
CMA	155
gene2pathway	12
ssize	129
preprocessCore	14231
MIMOSA	37
sva	7530
wateRmelon	864
ChAMP	705
triplex	100
Ringo	256
TDARACNE	34
ReactomePA	2625
affy	8065
genomeIntervals	212
mBPCR	98
polyester	132
RankProd	316
GSVA	6899
clusterProfiler	19389
cisPath	81
OncoSimulR	90
SNAGEE	89
weaver	98
regionReport	159
Roleswitch	31
GenomicInteractions	439
netbiov	46
fastseg	783
flowUtils	58
lpNet	102
chimera	37
Mfuzz	1356
GeneSelectMMD	140
TurboNorm	101
methylPipe	157
metaSeq	98
annaffy	304
ProCoNA	25
IsoGeneGUI	38
RTCA	95
BeadDataPackR	620
BrainStars	30
tRanslatome	232
QuasR	370
geecc	26
flowType	30
PSICQUIC	38
unifiedWMWqPCR	60
UniProt.ws	450
genomation	684
ArrayTV	31
iClusterPlus	416
synapter	162
gmapR	204
tilingArray	180
mdgsa	23
CNEr	3538
ReportingTools	663
TFBSTools	3590
topGO	3003
CAGEr	248
genomes	107
ITALICS	99
BHC	87
CNORdt	99
BiocCaseStudies	37
LVSmiRNA	33
BicARE	163
tracktables	164
TitanCNA	115
pepStat	80
Sushi	66
metaMS	199
Rolexa	22
ChemmineOB	333
Rqc	286
DOSE	19147
flowTrans	124
metabomxtr	84
CGEN	92
deepSNV	196
EnrichmentBrowser	631
exomePeak	37
jmosaics	16
sigPathway	53
miRNAtap	180
GOFunction	33
iSeq	78
ADaCGH2	113
CSAR	111
coRNAi	29
EDASeq	1820
PAPi	31
BufferedMatrix	132
AffyCompatible	52
KCsmart	104
ENVISIONQuery	30
ccrepe	135
clstutils	99
OmicCircos	205
MEDME	93
affycomp	135
procoil	93
omicade4	198
prebs	103
epigenomix	96
GSAR	126
SNPRelate	1731
made4	300
ASSET	137
ontoTools	15
DMRforPairs	38
hiAnnotator	134
compEpiTools	99
GenoView	8
affyQCReport	45
flowCL	32
MiChip	86
MotifDb	651
GLAD	244
SwimR	21
limmaGUI	113
ChemmineR	843
frmaTools	113
FEM	31
asmn	6
GRENITS	84
anota	120
AffyExpress	41
interactiveDisplayBase	6970
NormqPCR	183
les	131
nucleR	122
CoGAPS	370
ecolitk	110
hyperdraw	150
daMA	92
Agi4x44PreProcess	16
MMDiff	21
COHCAP	54
Rnits	84
BioMVCClass	100
GeneticsBase	8
VariantTools	187
proBAMr	82
GeneticsPed	119
deltaGseg	85
RNAither	43
BCRANK	116
PAA	97
mitoODE	25
antiProfiles	93
PANR	94
cn.mops	280
BiGGR	99
cycle	102
networkBMA	35
BioNet	295
flowMeans	186
Rbowtie	517
motifStack	732
spikeLI	79
fabia	210
GOexpress	110
SJava	13
girafe	129
MSnbase	3247
snpMatrix	15
ensemblVEP	161
CoRegNet	46
spade	21
PWMEnrich	225
RIPSeeker	39
AgiMicroRna	169
rsbml	180
CNORfuzzy	104
CNAnorm	100
ExiMiR	97
ddgraph	26
GlobalAncova	1068
ampliQueso	24
cnvGSA	103
proteinProfiles	77
MLP	183
TargetSearch	101
timecourse	117
seqCNA	50
pgUtils	10
piano	490
mdqc	136
keggorthology	257
ReQON	56
Resourcerer	13
HilbertVisGUI	67
rBiopaxParser	192
affypdnn	38
DECIPHER	2915
cleanUpdTSeq	135
lol	21
MSstats	537
exonmap	10
roar	95
hexbin	31
xmapcore	8
cosmo	10
GeneOverlap	546
mmnet	22
edd	15
GeneRfold	6
pairseqsim	4
affydata	4
Seqnames	0
Clomial	82
GSCA	89
MLSeq	187
gff3Plotter	3
ssviz	90
arrayQCplot	2
GSReg	93
RUVnormalize	97
MBASED	82
SGSeq	347
ASGSCA	89
rRDP	96
gQTLstats	26
TRONCO	101
RBGL	9415
S4Vectors	56000
geneplotter	5433
GenomicFiles	1339
GenomicRanges	44523
qpcrNorm	107
flowMerge	172
biomaRt	23128
GOSemSim	18563
GenomicAlignments	24164
GenomeInfoDb	56357
matchBox	77
ncdfFlow	1128
VariantAnnotation	12094
bridge	36
SRAdb	468
goProfiles	163
maskBAD	97
GraphAT	108
maSigPro	294
GEOquery	9758
occugene	85
RCASPAR	76
xcms	1795
KEGGREST	36175
multtest	12454
siggenes	3464
rhdf5	20345
MethylMix	119
MPFE	69
annotationTools	156
safe	695
ABarray	122
bsseq	1538
FGNet	143
stepNorm	96
inveRsion	27
CGHregions	121
cellHTS2	233
clusterStab	113
flowClust	810
GSEABase	9040
methylumi	1596
qusage	417
affxparser	1616
marray	1983
vsn	5163
MBAmethyl	65
Rtreemix	103
BAC	33
GOstats	1618
GeneticsDesign	32
staRank	83
tspair	37
agilp	117
plethy	38
GOTHiC	105
ConsensusClusterPlus	3085
fastLiquidAssociation	90
affyio	8165
Polyfit	25
attract	117
NGScopy	16
HilbertVis	212
MergeMaid	40
ToPASeq	23
VegaMC	90
Starr	36
ddCt	123
chipseq	652
factDesign	101
AGDEX	99
derfinderPlot	171
OrganismDbi	3119
snapCGH	112
sRAP	33
cummeRbund	255
flowBin	100
nem	45
AtlasRDF	16
affyContam	157
exomeCopy	283
GeneAnswers	46
gaggle	58
copynumber	133
metaArray	39
CAMERA	508
gCMAP	34
BUS	100
ternarynet	85
PICS	152
BridgeDbR	96
CGHcall	415
gaga	143
diffGeneAnalysis	89
MCRestimate	34
Streamer	96
aroma.light	2014
neaGUI	16
hiReadsProcessor	95
rTRM	200
MeasurementError.cor	84
SQUADD	50
PROMISE	139
pathRender	104
affyPara	42
GeneExpressionSignature	116
frma	179
AffyRNADegradation	97
SNPchip	42
phenoDist	24
apComplex	107
MethylSeekR	169
UNDO	87
SPIA	652
RUVSeq	934
SemDist	80
BiRewire	158
chipenrich	178
flowPlots	85
affyILM	116
a4Reporting	155
FunciSNP	31
Pbase	22
rain	119
rTRMui	92
pvca	281
OTUbase	99
sangerseqR	915
a4Core	200
ppiStats	45
xmapbridge	84
msmsEDA	301
qvalue	18126
BAGS	101
SigFuge	93
NOISeq	633
categoryCompare	108
flipflop	25
KEGGgraph	5489
a4Preproc	201
hpar	299
HMMcopy	342
MmPalateMiRNA	35
pint	26
seqTools	143
RBioinf	103
SigCheck	86
alsace	28
QDNAseq	391
ArrayTools	40
DupChecker	14
ClassifyR	387
RSVSim	99
LBE	239
M3D	19
RNAinteract	98
coGPS	90
iBBiG	148
sigaR	30
sizepower	98
Rchemcpp	26
CopyNumber450k	15
MGFM	92
mvGST	17
makePlatformDesign	7
hapFabia	93
yaqcaffy	36
betr	32
nudge	26
GeneNetworkBuilder	109
gprege	26
intansv	110
iterativeBMAsurv	82
DEGraph	93
arrayQualityMetrics	482
PAnnBuilder	33
clipper	122
saps	8
ABSSeq	147
MEIGOR	92
metagenomeSeq	1664
CNORfeeder	108
OutlierD	35
goTools	101
proteoQC	21
MANOR	100
plw	38
NetPathMiner	80
predictionet	33
flowcatchR	99
genArise	88
pRoloc	287
AnalysisPageServer	18
qpgraph	211
Rcade	41
DiffBind	1081
Heatplus	505
Harshlight	112
RamiGO	23
RCytoscape	25
flowCyBar	83
flowFit	28
sscore	50
waveTiling	32
RMAPPER	10
RmiR	34
RPA	140
SCAN.UPC	173
EBcoexpress	110
SLqPCR	99
dagLogo	114
CellNOptR	220
NarrowPeaks	30
DSS	866
PhenStat	90
cleaver	235
Risa	193
TCC	242
annmap	134
TransView	88
RRHO	113
DBChIP	37
KEGGprofile	40
dexus	36
farms	59
maDB	17
GEWIST	77
EasyqpcR	32
htSeqTools	33
iFlow	7
geneRxCluster	96
AnnBuilder	7
matchprobes	9
BeadExplorer	5
ELBOW	28
savR	31
ChIPQC	353
RTools4TB	6
SemSim	4
Rintact	6
pRolocGUI	117
RSNPper	9
mQTL.NMR	19
arrayMagic	6
MAIT	166
specL	87
cpvSNP	89
rgsepd	82
gQTLBase	24
iSPlot	4
SAGElyzer	6
QuartPAC	85
ChromoViz	5
Rsamtools	23906
zlibbioc	54157
annotate	17630
DESeq2	22052
BiocCheck	1716
hypergraph	203
copa	93
segmentSeq	113
beadarray	755
IPPD	28
idiogram	104
minfi	2507
ACME	126
flowViz	1038
DynDoc	1351
limma	33511
Category	1772
ShortRead	6324
OCplus	119
gcrma	1276
Icens	472
RNASeqPower	183
gaia	39
arrayQuality	167
spotSegmentation	29
globaltest	1920
CoverageView	95
domainsignatures	29
DESeq	178
bumphunter	2868
puma	141
GeneRegionScan	108
HTqPCR	145
FlowSOM	1106
switchBox	143
biovizBase	5374
DirichletMultinomial	4937
COMPASS	112
flowFlowJo	18
r3Cseq	116
crlmm	347
HDTD	70
snm	185
pcaMethods	5275
seqLogo	3927
CorMut	28
iterativeBMA	97
iBMQ	73
MassSpecWavelet	1811
groHMM	97
BiSeq	168
splicegear	33
VariantFiltering	118
affycoretools	423
GGBase	44
bgafun	33
quantsmooth	656
eisa	40
BitSeq	44
plrs	27
prada	47
pdInfoBuilder	150
Pviz	104
genoset	41
SAGx	46
triform	34
RefNet	25
CNVtools	30
RDAVIDWebService	54
macat	64
HEM	93
ChIPsim	115
BaseSpaceR	97
derfinder	585
maanova	49
aCGH	253
geNetClassifier	176
cobindR	33
trackViewer	592
pvac	95
SamSPECTRAL	184
MassArray	78
joda	33
BayesPeak	33
exonfindR	0
monocle	3271
SplicingGraphs	122
PCpheno	36
IdMappingRetrieval	33
AnnotationFuncs	35
Rariant	34
ggbio	2088
bioassayR	105
GenomicTuples	82
RTopper	97
LPE	124
ExpressionView	38
tigre	113
ARRmNormalization	94
CNTools	171
Repitools	315
cghMCR	113
FourCSeq	23
iPAC	157
mgsa	138
SBMLR	102
MSGFplus	26
GEOsubmission	98
biocGraph	275
PROcess	125
DeconRNASeq	267
a4Base	188
RbcBook1	141
SeqGSEA	249
beadarraySNP	63
gCMAPWeb	27
xps	30
flowPhyto	12
SeqVarTools	458
rbsurv	109
NCIgraph	134
rama	32
mzR	3365
customProDB	119
OLIN	137
ALDEx2	1203
missMethyl	1070
facopy	14
ctc	297
ArrayExpressHTS	36
phyloseq	5520
ReadqPCR	226
SIM	100
scsR	28
webbioc	106
GOSim	105
RchyOptimyx	31
flowBeads	97
DEGreport	626
eiR	95
TSSi	28
REDseq	124
PSEA	48
GeneMeta	138
quantro	356
DriverNet	81
CGHbase	447
Vega	26
CAFE	104
fdrame	94
qcmetrics	135
paxtoolsr	120
a4	129
trio	135
pkgDepTools	47
HELP	94
TypeInfo	82
bioDist	281
paircompviz	89
COSNet	82
NTW	85
ChIPseqR	122
metahdep	92
PADOG	347
altcdfenvs	158
genefu	413
easyRNASeq	224
ChIPXpress	108
SeqArray	954
PING	113
widgetTools	1354
miRNApath	91
MiPP	99
pamr	15
isobar	117
pathifier	118
graphite	3148
ArrayExpress	452
BioSeqClass	36
pickgene	83
rqubic	119
dks	77
spkTools	90
csaw	596
rpx	314
RDRToolbox	163
RWebServices	16
h5vc	122
flowMap	53
multiscan	92
NetSAM	121
shinyMethyl	139
STATegRa	91
vbmp	123
Rdisop	457
spliceR	27
CORREP	50
MSnID	337
mzID	3132
qrqc	41
CRISPRseek	189
STRINGdb	1284
INPower	93
HTSanalyzeR	39
flowCHIC	95
OLINgui	99
sagenhaft	92
imageHTS	47
spliceSites	27
pcaGoPromoter	28
minet	846
Rdbi	12
clst	128
codelink	120
iChip	95
msmsTests	291
birta	32
PLPE	94
HTSFilter	245
pcot2	44
SimBindProfiles	62
GWASTools	641
plgem	147
GeneGroupAnalysis	9
twilight	144
PECA	94
rfPred	89
logicFS	121
CSSP	28
cosmoGUI	10
simulatorAPMS	8
Ruuid	12
BEAT	96
rflowcyt	13
messina	86
Rcpi	148
viper	760
fbat	7
RMAGEML	10
biocDatasets	9
oposSOM	119
riboSeq	0
derfinderHelper	584
IMPCdata	69
nethet	97
pxr	0
PROPER	118
rtracklayer	20992
XVector	49389
BiocInstaller	288
sapFinder	29
flowQ	29
SMAP	57
BiocGenerics	57312
mosaics	199
flowFP	201
plier	145
Rsubread	2277
motifRG	32
AllelicImbalance	131
Biostrings	48095
graph	18882
flowWorkspace	1238
AnnotationHub	11418
edgeR	24342
impute	10655
GeneGA	77
rSFFreader	24
reb	34
NuPoP	100
EBSeq	415
flowDensity	294
BiocStyle	5726
AffyTiling	27
bgx	105
microRNA	187
R453Plus1Toolbox	113
DEDS	31
DOQTL	19
openCyto	669
lumi	1280
QUALIFIER	34
flowStats	515
ROC	1142
DNAcopy	5286
mcaGUI	34
gaucho	22
ASEB	89
RGalaxy	33
meshr	161
dyebias	108
SpacePAC	129
massiR	90
seqplots	27
CompGO	26
maCorrPlot	87
flowClean	217
Genominator	40
LiquidAssociation	122
SomatiCA	20
simulatorZ	23
fmcsR	278
affyPLM	1069
splots	235
oligo	1695
methyAnalysis	39
supraHex	486
HiTC	165
prot2D	23
MEDIPS	149
survcomp	1299
methVisual	31
GeneSelector	33
convert	170
Mulcom	106
epivizr	166
plateCore	33
oligoClasses	1699
XDE	112
GGtools	47
parody	138
casper	95
gage	854
pathview	4592
DAVIDQuery	19
ballgown	642
baySeq	482
gpls	280
CancerMutationAnalysis	36
IdeoViz	96
MeSHDbi	275
CALIB	38
HCsnip	25
charm	41
a4Classif	153
iontree	24
nnNorm	100
CNORode	119
tkWidgets	1355
FRGEpistasis	81
BADER	96
npGSEA	94
bigmemoryExtras	30
EDDA	30
dualKS	36
CexoR	100
iASeq	81
focalCall	19
MiRaGE	97
randPack	88
stepwiseCM	25
logitT	44
CRImage	120
ibh	87
maigesPack	63
DrugVsDisease	168
trigger	107
wavClusteR	88
RpsiXML	45
cancerclass	245
LPEadj	58
GSEAlm	117
SPEM	116
arrayMvout	98
metagene	38
rHVDM	32
tweeDEseq	179
COPDSexualDimorphism	4
clippda	102
ROntoTools	223
blima	91
EBarrays	243
IdMappingAnalysis	28
PREDA	117
chroGPS	35
pdmclass	33
ASSIGN	147
DEGseq	191
TEQC	112
OrderedList	105
rnaSeqMap	35
SANTA	78
MineICA	106
RefPlus	61
genoCN	85
DMRcate	1076
rGADEM	327
Basic4Cseq	100
MSGFgui	24
EBSeqHMM	49
systemPipeR	1200
MultiMed	82
biomvRCNS	102
SpeCond	107
chopsticks	123
PGSEA	74
hopach	357
ScISI	43
DASiR	18
vtpnet	105
DNaseR	7
compcodeR	112
riboSeqR	92
cosmiq	169
Metab	115
GraphAlignment	86
OSAT	112
cn.farms	103
flowPeaks	207
BGmix	27
CNVrd2	98
cqn	334
CGHnormaliter	107
cellGrowth	27
lmdme	90
MethylAid	123
HTSeqGenie	71
inSilicoDb	25
erccdashboard	106
netresponse	108
GeneR	12
simpleaffy	108
Clonality	39
ChIPseeker	1879
RMassBank	134
SLGI	44
MantelCorr	79
explorase	31
RedeR	349
PathNet	94
rMAT	32
shinyTANDEM	26
adSplit	110
HybridMTest	158
Mirsynergy	23
flowQB	31
STAN	28
GSRI	101
methylMnM	108
Cormotif	105
pepXMLTab	85
MotIV	48
gespeR	102
KEGGSOAP	16
sSeq	207
LMGene	36
makecdfenv	219
affylmGUI	136
oneChannelGUI	42
seqbias	82
nondetects	62
interactiveDisplay	127
MBCB	90
GeneTraffic	8
flowMatch	102
inSilicoMerging	26
rols	497
gwascat	702
phenoTest	168
Rmagpie	104
lapmix	88
cellHTS	31
panp	120
BRAIN	147
manta	32
GraphPAC	131
GENE.E	22
ffpe	101
RTN	210
virtualArray	12
VanillaICE	296
externalVector	10
DTA	109
maPredictDSC	91
TargetScore	99
MinimumDistance	125
DART	99
SSPA	93
RLMM	88
rTANDEM	31
PatientGeneSets	6
GeneSpring	8
GeneTS	5
biosvd	31
SomaticSignatures	200
RdbiPgSQL	10
metaseqR	32
MoPS	17
RGSEA	94
msQC	0
stam	5
keggorth	5
TSCAN	684
GOsummaries	52
AIMS	416
Rredland	7
seqPattern	783
CODEX	137
ChIPComp	88
CAnD	21
FISHalyseR	80
birte	16
Imetagene	21
dupRadar	139
RCy3	951
RareVariantVis	92
SIMAT	86
podkat	92
EnrichedHeatmap	579
Prostar	105
DAPAR	161
lfa	306
ENCODExplorer	22
erma	137
caOmicsV	16
EMDomics	102
Path2PPI	84
OperaMate	10
BEclear	98
SVM2CRM	16
GENESIS	372
AnnotationHubData	387
TIN	83
TPP	130
SICtools	73
RCyjs	91
FlowRepositoryR	21
goCluster	2
hierGWAS	86
GEOsearch	10
R4RNA	667
mAPKL	28
traseR	87
globalSeq	77
BrowserVizDemo	9
rCGH	143
INSPEcT	97
diffHic	133
systemPipeRdata	0
TimerQuant	0
exprExternal	2
dcGSA	74
biobroom	240
canceR	120
chromDraw	86
TarSeqQC	26
SISPA	29
MEAL	112
CNPBayes	16
rcellminer	101
motifbreakR	231
genotypeeval	29
GUIDEseq	109
cogena	109
DNABarcodes	183
LedPred	68
mogsa	238
pmm	79
sbgr	6
seq2pathway	222
XBSeq	22
ABAEnrichment	24
CopywriteR	39
acde	96
scde	399
soGGi	370
muscle	368
IONiseR	101
GoogleGenomics	14
variancePartition	968
sincell	86
pandaR	147
destiny	663
NanoStringQCPro	38
RTCGAToolbox	534
Rhtslib	25015
rnaseqcomp	91
similaRpeak	89
mirIntegrator	96
immunoClust	96
HIBAG	132
FamAgg	93
pwOmics	200
normalize450K	75
SWATH2stats	85
SummarizedExperiment	39455
ggtree	21641
applera	2
iSNetwork	3
bim	4
GenomeBase	2
reposTools	2
rfcdmin	3
SNAData	2
lpsymphony	1006
kimod	12
myvariant	105
diggit	83
DeMAND	69
metagenomeFeatures	21
iCheck	82
bamsignals	1073
NanoStringDiff	106
cytofkit	28
miRLAB	100
BBCAnalyzer	88
IVAS	109
CNVPanelizer	89
ensembldb	10074
skewr	76
conumee	187
GreyListChIP	998
iGC	83
ELMER	200
PGA	21
OGSA	16
metaX	6
RiboProfiling	116
RUVcorr	86
RNAprobR	18
DiffLogo	99
ProtGenerics	11837
RnBeads	313
netbenchmark	18
SEPA	14
Prize	18
synlet	78
flowVS	129
RBM	84
MatrixRider	88
BubbleTree	105
fCI	80
RnaSeqSampleSize	121
subSeq	96
pathVar	25
y2hStat	2
iCOBRA	261
BioQC	140
biomformat	5562
transcriptR	98
profileScoreDist	76
ENmix	261
ropls	1241
consensusSeekeR	120
ldblock	120
Guitar	156
regioneR	1990
LOLA	305
OmicsMarkeR	19
DChIPRep	21
gcatest	100
GeneBreak	93
miRcomp	85
sigsquared	82
FindMyFriends	23
edge	125
LowMACA	27
SNPhood	86
gdsfmt	2120
parglms	77
Cardinal	222
LEA	555
Oscope	112
MeSHSim	8
gtrellis	153
DMRcaller	111
coMET	91
ProteomicsAnnotationHubData	20
R3CPET	84
HilbertCurve	111
RTCGA	545
msa	1731
TCGAbiolinks	4171
eudysbiome	78
SELEX	93
CausalR	89
ComplexHeatmap	15482
MethTargetedNGS	78
BrowserViz	180
rGREAT	678
InPAS	96
mtbls2	0
widgetInvoke	5
mmgmos	3
multiClust	110
sidap	0
cellTree	24
sevenbridges	90
EmpiricalBrownsMethod	153
GenVisR	293
ROTS	235
chromPlot	242
nucleoSim	81
ExperimentHub	7766
garfield	74
Uniquorn	85
psygenet2r	105
sscu	74
QUBIC	160
CountClust	19
EBSEA	75
pcaExplorer	479
BatchQC	129
BgeeDB	160
pqsfinder	124
epivizrData	151
oppar	91
dSimer	11
covEB	76
MetCirc	103
esetVis	93
MGFR	91
AMOUNTAIN	116
methylKit	654
rDGIdb	90
CVE	15
LOBSTAHS	121
chromstaR	105
switchde	79
geneAttribution	86
CellMapper	85
geneXtendeR	126
uSORT	84
BaalChIP	88
statTarget	118
annotatr	499
MutationalPatterns	329
HelloRanges	153
phosphonormalizer	66
MWASTools	184
IWTomics	94
clusterSeq	87
RJMCMCNucleosomes	85
CrispRVariants	157
GSALightning	69
PanVizGenerator	19
ggcyto	877
splineTCDiffExpr	1
IHW	731
iCARE	169
Mergeomics	90
SMITE	82
contiBAIT	52
ExpressionAtlas	255
dada2	2315
HDF5Array	14701
doppelgangR	226
miRNAmeConverter	85
SwathXtend	87
Linnorm	243
AneuFinder	113
debrowser	188
scran	4872
DRIMSeq	318
pbcmc	9
DEFormats	273
LymphoSeq	95
epivizrServer	156
MultiDataSet	1279
ImmuneSpaceR	54
Director	61
netprioR	69
covRNA	81
FunChIP	51
fgsea	17895
qsea	93
ASAFE	73
SNPediaR	70
ImpulseDE	9
MODA	82
maftools	2587
geneplast	120
MADSEQ	85
RCAS	168
CancerSubtypes	85
eegc	83
LINC	13
SIMLR	256
SPLINTER	84
CancerInSilico	26
MoonlightR	104
GOpro	172
MAST	2133
KEGGlincs	96
yamss	88
flowPloidy	86
fCCAC	83
StarBioTrek	49
psichomics	94
chimeraviz	129
samExploreR	14
Chicago	117
QuaternaryProd	90
SC3	375
BasicSTARRseq	78
RGraph2js	81
metaCCA	137
RImmPort	64
GenRank	13
MBttest	77
biosigner	115
DNAshapeR	104
bacon	139
CONFESS	99
GMRP	79
recoup	83
MultiAssayExperiment	6301
GenoGAM	21
BadRegionFinder	80
splineTimeR	93
odseq	83
genbankr	75
ClusterSignificance	79
InteractionSet	2021
SpidermiR	69
Harman	191
CHRONOS	84
PureCN	182
bioCancer	98
msPurity	100
Pigengene	142
GEM	77
NetCRG	0
sights	83
crossmeta	184
ctsGE	82
IPO	205
GeneGeneInteR	78
BayesKnockdown	75
SVAPLSseq	12
Anaquin	81
GAprediction	75
PharmacoGx	303
signeR	100
Pi	61
DEsubs	84
readat	13
regsplice	77
meshes	173
PathoStat	167
FitHiC	92
SRGnet	14
crisprseekplus	34
BPRMeth	126
GRridge	25
RnaSeqGeneEdgeRQL	3
scone	129
scDD	154
treeio	20711
JunctionSeq	20
flowAI	575
EWCE	250
tximport	3434
tofsims	18
scater	7294
clustComp	88
cellity	87
MethPed	81
ExperimentHubData	296
PCAN	87
EpiCluster	0
genphen	17
OncoScore	88
CINdex	89
ISoLDE	63
isomiRs	186
Glimma	1137
EGSEA	247
diffloop	33
EGAD	91
epivizrStandalone	84
MMDiff2	80
normr	154
DeepBlueR	37
CytoML	451
ccmap	104
ASpli	124
clusterExperiment	331
recount	415
GRmetrics	108
YAPSA	109
MetaboSignal	143
gCrisprTools	83
philr	182
alpine	37
BiocWorkflowTools	187
synergyfinder	223
TVTB	91
bigmelon	90
M3Drop	670
matter	253
anamiR	12
yarn	145
CCPROMISE	87
proFIA	24
DelayedArray	41934
BUMHMM	104
sparseDOSSA	33
ramwas	148
gcapc	79
coseq	163
MCbiclust	81
discordant	106
karyoploteR	857
TCGAbiolinksGUI	34
sampleClassifier	88
GISPA	43
epiNEM	170
multiOmicsViz	44
NADfinder	87
RIVER	78
ImpulseDE2	19
GenomicScores	731
CATALYST	600
IMAS	82
RaggedExperiment	883
pgca	65
RITAN	96
IsoformSwitchAnalyzeR	283
RTNsurvival	85
scoreInvHap	85
OPWeight	76
GENIE3	1263
rexposome	129
zFPKM	136
DEP	549
Onassis	18
HiCcompare	289
cytolib	2731
Rbowtie2	310
SPONGE	70
TMixClust	99
openPrimeR	179
MSstatsQC	104
apeglm	3647
BASiCS	182
scfind	12
DelayedMatrixStats	15967
methimpute	81
JASPAR2018	5
PathwaySplice	12
pcxn	57
anota2seq	100
chromVAR	1185
scPipe	152
bnbc	225
topdownr	99
loci2path	84
TFEA.ChIP	99
annbuilder	0
MAGeCKFlute	364
TCseq	277
ChIPexoQual	94
splatter	504
REMP	94
EventPointer	93
twoddpcr	80
MIGSA	23
BioCor	102
motifcounter	81
hicrep	11
STROMA4	32
AnnotationFilter	11154
methylInheritance	88
semisup	73
ATACseqQC	391
TReNA	3
ndexr	87
GA4GHshiny	89
DASC	2
methInheritSim	91
miRBaseConverter	120
motifmatchr	1382
Scale4C	87
Rhdf5lib	23974
scmap	231
phenopath	110
BiocSklearn	109
epivizrChart	85
RVS	75
InterMineR	98
TFHAZ	77
AUCell	2483
panelcn.mops	103
openPrimeRui	68
ChIPanalyser	88
multiMiR	260
methyvim	16
rhdf5client	171
ontoProc	282
TnT	50
iterClust	43
oncomix	75
stageR	192
tenXplore	70
vulcan	89
runibic	93
SeqSQC	191
iranges	1
biostrings	1
funtooNorm	90
mimager	90
mapscape	67
POST	14
BiocFileCache	26149
DaMiRseq	142
wiggleplotr	193
BLMA	97
cydar	114
BioMedR	5
biotmle	84
cellbaseR	99
msgbsR	89
zinbwave	975
RProtoBufLib	2721
consensusOV	135
ClusterJudge	81
IrisSpatialFeatures	6
microbiome	1755
Doscheda	87
DMCHMM	76
miRmine	47
progeny	480
M3C	683
mpra	87
MIRA	138
slalom	165
flowclust	0
bcSeq	81
MetaNeighbor	113
signet	11
biocinstaller	2
GOfuncR	370
bsgenome	0
shortread	0
DMRScan	71
goSTAG	87
swfdr	90
RTNduals	109
geneClassifiers	71
timescape	91
cellscape	67
Logolas	14
Organism.dplyr	432
rqt	65
IntEREst	96
MaxContrastProjection	15
netReg	16
branchpointer	105
GenomicDataCommons	1129
banocc	102
basecallQC	91
flowTime	89
pathprint	13
GA4GHclient	133
ideal	119
metavizr	21
PPInfer	231
heatmaps	283
TSRchitect	19
IntramiRExploreR	76
coexnet	21
mfa	117
beachmat	16154
SingleCellExperiment	15803
oneSENSE	28
diffuStats	89
EpiDISH	703
SCnorm	130
CEMiTool	164
miRsponge	11
seqcombo	76
geoquery	1
TFARM	73
amplican	108
cbaf	89
seqCAT	88
trena	30
chromswitch	25
restfulSE	169
transcriptogramer	88
ivygapSE	77
MetaCyto	100
PROPS	75
ANF	80
esATAC	110
gep2pep	77
omicsPrint	88
LineagePulse	35
rhvdm	0
affyplm	0
biobase	1
mCSEA	123
CHARGE	12
pogos	121
srnadiff	83
enrichplot	18421
MetaGxOvarian	3
dmrseq	232
SummarizedBenchmark	45
phantasus	242
FELLA	149
decontam	1730
singleCellTK	332
perturbatr	12
igvR	134
hipathia	227
singscore	1539
sevenC	74
RSeqAn	116
CAGEfightR	271
InTAD	80
MSstatsQCgui	69
slingshot	1495
Rmmquant	80
CellTrails	79
CAMTHC	8
methylGSA	140
ipdDb	206
appreci8R	104
scruff	91
LRBaseDbi	135
DEqMS	253
miRSM	71
SIMD	73
sparsenetgls	66
annotationdbi	1
RNASeqR	14
MPRAnalyze	88
COCOA	102
HiCBricks	159
ProteoMM	97
artMS	100
compartmap	37
tRNAdbImport	140
rScudo	75
plpe	0
DelayedDataFrame	85
deco	17
rbgl	1
tkwidgets	1
genomicfeatures	1
dnacopy	1
seqlogo	0
DropletUtils	2548
RGMQL	64
Trendy	79
RcisTarget	963
omicplotR	86
ChIPSeqSpike	14
kissDE	85
DominoEffect	79
iSEE	518
martini	80
GSEABenchmarkeR	106
Rgin	14
TissueEnrich	266
PowerExplorer	12
mdp	75
rWikiPathways	410
SparseSignatures	81
ccfindR	106
CytoDx	101
iCNV	85
SEPIRA	26
RNAdecay	60
GDSArray	247
SIAMCAT	147
onlineFDR	61
kmknn	0
topgo	0
MetID	80
GeneAccord	16
coRdon	206
tximeta	1070
HPAanalyze	145
NormalyzerDE	190
hierinf	61
countsimQC	317
OMICsPCA	88
FCBF	44
IsoCorrectoR	132
LoomExperiment	636
levi	61
MTseeker	5
PrecisionTrialDrawer	14
snpmatrix	1
roma	2
hmdbQuery	96
MACPET	17
powerTCR	333
DEScan2	91
diffcoexp	221
vidger	135
tRNAscanImport	91
GateFinder	84
GARS	83
DEsingle	266
plyranges	1247
seqsetvis	102
ChIC	20
SDAMS	81
TFutils	100
diffcyt	479
missRows	77
Sconify	78
TCGAutils	829
netSmooth	90
TxRegInfra	14
BiocVersion	60249
maser	147
Ularcirc	87
GIGSEA	69
qPLEXanalyzer	89
condcomp	6
OUTRIDER	224
ACE	115
strandCheckR	79
multiHiCcompare	182
INDEED	60
REBET	72
SCBN	103
ERSSA	81
BiocNeighbors	11075
glmSparseNet	239
bayNorm	102
mixOmics	2646
tRNA	162
MSstatsTMT	304
KinSwingR	74
abseqR	81
universalmotif	781
transite	81
PepsNMR	154
decompTumor2Sig	153
scTensor	137
DNABarcodeCompatibility	60
ADAM	215
IsoCorrectoRGUI	76
degseq	1
pkgdeptools	0
genomicranges	0
scFeatureFilter	73
edger	1
omicRexposome	87
BiFET	82
drawProteins	214
GDCRNATools	285
CTDquerier	79
gsean	84
DEComplexDisease	18
BEARscc	75
iteremoval	15
CellScore	76
ddPCRclust	99
TTMap	79
MDTS	71
GeneStructureTools	102
IMMAN	74
adaptest	11
ASICS	112
BioNetStat	83
scmeth	90
RandomWalkRestartMH	86
BiocOncoTK	78
OmaDB	286
ORFik	203
sigFeature	262
iasva	86
FastqCleaner	104
gwasurvivr	111
icetea	77
sesame	896
slinky	15
mlm4omics	4
NBSplice	18
BUScorrect	75
MetNet	80
consensus	70
brainImageR	4
EnhancedVolcano	4803
celaref	93
nuCpos	73
XINA	70
BiocPkgTools	153
plotGrouper	68
FoldGO	35
primirTSS	82
breakpointR	83
cicero	232
QSutils	129
HIREewas	74
ExCluster	63
AffiXcan	79
gpart	22
cTRAP	92
TimeSeriesExperiment	17
BDMMAcorrect	32
AssessORF	167
NeighborNet	27
Wrench	1665
consensusDE	89
VCFArray	82
cntools	1
logitt	1
gostats	1
category	1
rgraphviz	2
bayseq	1
SpatialCPie	94
arrayexpress	0
RCM	88
epihet	16
SMAD	68
Rcwl	120
BiocSingular	12735
alevinQC	105
fishpond	255
CNVRanger	132
miRspongeR	65
Structstrings	177
DeMixT	119
GNET2	70
PoTRA	13
qckitfastq	86
proBatch	29
batchelor	4001
survtype	72
TNBC.CMS	45
CellMixS	97
ngsReports	92
DiscoRhythm	88
scMerge	569
SubCellBarCode	80
metagene2	92
scRecover	75
profileplyr	239
netboost	67
gpuMagic	70
SQLDataFrame	70
RNAmodR	129
RNAmodR.AlkAnilineSeq	82
TOAST	438
scGPS	101
Autotuner	10
AlphaBeta	72
scBFA	82
muscat	535
brendaDb	74
SingleR	4260
gramm4R	7
deltaCaptureC	72
CrossICC	5
idr2d	74
DMCFB	75
CNVfilteR	80
ASpediaFI	15
biscuiteer	91
MMUPHin	153
scPCA	105
scTGIF	242
HCAExplorer	6
MOSim	81
geometadb	1
mitch	75
PAIRADISE	111
Rhisat2	243
adductomicsR	80
bigPint	25
topconfects	195
phemd	30
SpectralTAD	99
Modstrings	219
CoRegFlux	6
evaluomeR	80
PrInCE	79
qsmooth	197
RcwlPipelines	120
CHETAH	112
MOFA	9
pipeFrame	175
infercnv	1136
celda	775
TPP2D	75
VennDetail	277
ssrch	99
PAST	72
XCIR	9
KnowSeq	81
AWFisher	81
Maaslin2	1017
onechannelgui	1
GenomicOZone	94
SigsPack	70
calm	60
debCAM	79
SharedObject	157
pwrEWAS	21
microbiomeDASim	77
methylCC	90
MSstatsSampleSize	20
ssPATHS	66
flowSpy	7
oppti	64
MethCP	13
RNAsense	66
tradeSeq	535
MACSQuantifyR	58
cliqueMS	123
selectKSigs	70
rsamtools	1
graper	69
iterativebmasurv	0
cytofast	10
OVESEG	87
GAPGOM	15
cola	141
Melissa	72
rmelting	79
BioMM	17
atSNP	102
pram	79
DepecheR	89
hypeR	119
CellBench	145
pathwayPCA	93
AMARETTO	219
sitePath	78
OmicsLonDA	19
dcanr	167
enrichTF	57
animalcules	231
SynMut	69
mnem	171
RepViz	118
sRACIPE	87
StructuralVariantAnnotation	244
HCABrowser	8
arrayqualitymetrics	0
MMAPPR2	24
MetaVolcanoR	52
RNAmodR.ML	77
SBGNview	218
circRNAprofiler	96
SCANVIS	82
gemini	65
HiLDA	96
proDA	281
VariantExperiment	65
IgGeneUsage	68
fcScan	84
sojourner	18
SEtools	233
ReactomeGSA	243
GmicR	84
MEB	70
ALPS	10
gscreend	71
blacksheepr	88
LinkHD	80
OmnipathR	641
SAIGEgds	112
schex	233
scDblFinder	1548
DEWSeq	84
fcoex	62
methrix	107
flowSpecs	100
brainflowprobes	48
BiocSet	337
MBQN	78
cummerbund	1
ceRNAnetsim	63
chippeakanno	0
gseabase	0
geneticsbase	0
PCAtools	1256
CluMSID	82
divergence	65
doseR	74
scds	511
projectR	128
mbkmeans	408
Xeva	141
BANDITS	133
lipidr	185
CopyNumberPlots	177
nanotatoR	86
GladiaTOX	68
TreeSummarizedExperiment	1979
scAlign	18
ADAMgui	117
HumanTranscriptomeCompendium	57
NBAMSeq	192
RNAmodR.RiboMethSeq	84
ViSEAGO	140
PhyloProfile	94
ncGTW	147
BUSpaRse	214
APAlyzer	95
Qtlizer	71
lionessR	75
BioTIP	93
pulsedSilac	10
PERFect	32
peakPantheR	77
Spaniel	100
signatureSearch	241
GCSscore	20
target	77
waddR	67
netboxr	12
biomart	1
widgettools	1
biobtreeR	65
easyreporting	74
EnMCB	77
scMAGeCK	9
reconsi	72
struct	167
netDx	58
clustifyr	168
TreeAndLeaf	141
SCOPE	84
sarks	68
rrvgo	577
exomePeak2	99
EpiTxDb	100
cmapR	424
NoRCE	74
GCSConnection	8
GeneTonic	370
TAPseq	82
BRGenomics	105
MatrixGenerics	39901
scHOT	80
SynExtend	76
snapcount	78
CiteFuse	99
optimalFlow	82
scClassify	135
PloGO2	54
sangeranalyseR	207
BrainSABER	12
flowCut	130
corral	91
ToxicoGx	89
pipeComp	76
fmrs	141
HCAMatrixBrowser	3
labeling	129
scCB2	80
CytoTree	16
ILoReg	68
ggtreeExtra	1094
MesKit	98
VplotR	78
HPAStainR	12
Omixer	73
Spectra	2005
periodicDNA	69
GenomeInfoDbData	18
ResidualMatrix	3727
preciseTAD	82
org.Hs.eg.db	14
PhosR	134
MethReg	78
SeqGate	72
MSstatsPTM	223
GCSFilesystem	8
customCMPdb	85
microbiomeExplorer	95
systemPipeShiny	82
BayesSpace	264
MOGAMUN	70
musicatk	107
AnVILPublish	78
tidySummarizedExperiment	390
SCFA	66
moanin	222
degraph	1
VarCon	66
ReactomeContentService4R	125
GenomicDistributions	117
splines	1
stats4	1
tools	1
utils	1
geneLenDataBase	10
hgu133plus2.db	7
GO.db	14
Homo.sapiens	5
pga	0
hicbricks	0
rstudio	1
string	0
methods	1
compiler	1
CSSQ	70
PubScore	9
packFinder	79
BSgenome.Hsapiens.UCSC.hg19	7
frenchFISH	58
dittoSeq	1451
tidybulk	317
ribor	73
vasp	6
tscR	15
ribosomeProfilingQC	103
receptLoss	64
spicyR	202
HIPPO	70
Dune	64
ROCpAI	60
glmGamPoi	4808
distinct	309
scry	258
SingleCellSignalR	260
FRASER	132
CoreGx	381
BiocDockerManager	12
MsCoreUtils	3700
TADCompare	101
DegNorm	75
SPsimSeq	225
Rtpca	83
dichromat	3
magrittr	13
sendmailR	1
scDataviz	98
RegEnrich	122
zellkonverter	1394
Nebulosa	1199
BiocIO	20004
idpr	87
ISAnalytics	70
proActiv	87
ncRNAtools	70
DEXICA	0
pageRank	72
rsemmed	62
vcfR	1
ChromSCape	82
MSPrep	208
MSstatsTMTPTM	6
NewWave	123
famat	78
marr	71
MSEADbi	6
MSstatsConvert	488
biocthis	269
VERSO	67
GSgalgoR	70
NanoMethViz	106
megadepth	150
ADImpute	91
SpatialDecon	220
graphat	1
flowGraph	65
RLassoCox	73
stats	1
KEGG.db	1
PFP	11
datasets	1
grid	1
NPARC	88
CeTF	102
pmp	128
rSWeeP	74
basilisk	3770
affio	0
MEAT	72
gmoviz	75
ExploreModelMatrix	181
MicrobiotaProcess	516
timeOmics	102
iSEEu	140
MOMA	77
regutools	94
GPA	72
LACE	207
randRotation	63
OpenStats	62
cBioPortalData	430
scuttle	9421
getDEE2	69
padma	76
bitops	82
bluster	5633
GWENA	279
infinityFlow	97
GSEAmining	82
rebook	137
snifter	147
POMA	184
TimiRGeN	44
recountmethylation	94
msImpute	207
TileDBArray	79
nearBynding	72
velociraptor	157
scp	225
rnaEditr	81
spatialHeatmap	259
Informeasure	62
Herper	145
recount3	315
scRepertoire	522
lefser	558
cfDNAPro	94
metabCombiner	104
MOFA2	521
metapod	4891
shinyepico	87
censcyt	76
GEOfastq	95
nempi	78
BSgenome.Hsapiens.UCSC.hg38	11
PFAM.db	11
TxDb.Hsapiens.UCSC.hg19.knownGene	5
CAEN	64
ga4ghclient	0
cindex	0
graphics	1
dearseq	251
BgeeCall	65
SimFFPE	67
DAMEfinder	80
DIAlignR	66
structToolbox	124
ctgGEM	10
basilisk.utils	3503
RNAAgeCalc	88
scTHI	64
eisaR	133
rhdf5filters	19654
combi	106
sparseMatrixStats	15707
peco	69
cytomapper	345
TBSignatureProfiler	87
CARNIVAL	173
dpeak	24
ROSeq	76
rfaRm	67
methylSig	101
GGPA	63
spqn	66
AnVIL	569
metaseqR2	97
weitrix	77
multicrispr	80
MouseFM	204
multiGSEA	151
simplifyEnrichment	883
PeacoQC	264
RadioGx	84
brew	49
RColorBrewer	12
MultiBaC	95
wpm	77
escape	446
transomics2cytoscape	84
SpatialExperiment	3591
hummingbird	64
uncoverappLib	78
QFeatures	2448
UMI4Cats	77
Rfastp	158
RIPAT	27
metabolomicsWorkbenchR	99
FScanR	18
SCATE	62
ANCOMBC	1229
facets	0
FilterFFPE	79
aggregateBioVar	89
tomoda	73
bambu	301
CellaRepertorium	41
GWAS.BAYES	75
densvis	1774
dasper	14
AnVILBilling	67
tidySingleCellExperiment	230
ExperimentSubset	90
AlpsNMR	86
CNVgears	33
mina	60
bnem	82
ttgsea	103
SplicingFactory	62
BumpyMatrix	557
mumosa	90
parallel	1
tcltk	1
UTAR	0
PoDCall	63
omicsmarker	0
prostar	0
rlang	487
base	1
simpleSingleCell	0
sigpathway	1
grDevices	1
calib	0
RiboDiPA	71
SOMNiBUS	70
PhIPData	118
autonomics	70
OSCA.basic	18
lisaClust	149
mia	1551
drugTargetInteractions	77
barcodetrackR	72
interacCircos	75
sechm	174
DelayedRandomArray	107
diffUTR	73
systemPipeTools	78
POWSC	81
HubPub	127
ichorCNA	0
cosmosR	99
RCSL	65
ReactomeGraph4R	56
Rbec	78
awst	69
csawBook	4
scShapes	62
VAExprs	65
cageminer	78
genomicInstability	78
veloviz	64
ggspavis	206
svaRetro	79
scAnnotatR	221
rGenomeTracks	68
imcRtools	231
ODER	8
MicrobiomeProfiler	141
epistack	68
biodbLipidmaps	42
Cepo	205
deconvR	85
cliProfiler	67
mosbi	66
TargetDecoy	78
ggmanh	253
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rprimer	88
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coMethDMR	85
VGAM	16
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mulcom	1
IlluminaHumanMethylation450kmanifest	5
CONSTANd	68
scClassifR	5
NanoStringNCTools	425
InteractiveComplexHeatmap	426
TrajectoryUtils	1970
ORFhunteR	73
MACSr	120
HiCDCPlus	107
TrajectoryGeometry	58
Summix	64
midasHLA	71
MsBackendMgf	417
OSCA.workflows	31
OSCA.intro	51
geva	66
CelliD	250
BioNERO	318
fedup	68
CIMICE	69
methylscaper	100
epidecodeR	68
conclus	9
CNViz	76
cellmigRation	64
mirTarRnaSeq	83
tricycle	258
FEAST	135
supersigs	153
quantiseqr	506
multiSight	58
fgga	68
SingleMoleculeFootprinting	79
msqrob2	170
epigraHMM	80
DExMA	79
MatrixQCvis	219
GenomicSuperSignature	84
rawrr	226
spiky	64
dStruct	65
BUSseq	76
NanoTube	95
segmenter	85
Dino	75
NeuCA	52
svaNUMT	76
spatzie	65
enhancerHomologSearch	73
scanMiRApp	70
metapone	78
orthogene	348
ggmsa	559
transformGamPoi	95
nullranges	203
biodbHmdb	79
CyTOFpower	63
benchdamic	91
surfaltr	65
netOmics	30
txcutr	67
RLSeq	32
MSstatsLiP	94
RiboCrypt	72
scatterHatch	63
sccomp	113
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BSgenome.Hsapiens.NCBI.GRCh38	1
KaryoploteR	0
ScaledMatrix	12529
VaSP	79
MsFeatures	1575
MetaboCoreUtils	1917
TraRe	9
MAGAR	177
satuRn	294
IRISFGM	66
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PDATK	186
ComPrAn	68
InterCellar	90
sitadela	69
miaViz	280
SingleRBook	3
airpart	85
LRcell	67
ptairMS	68
ppcseq	72
miloR	343
granulator	130
tLOH	67
immunotation	70
biodb	191
epialleleR	77
mistyR	111
DeepPINCS	101
OSCA.multisample	17
csdR	63
BindingSiteFinder	75
MAI	78
rmspc	76
plotgardener	327
bugsigdbr	187
tanggle	87
atena	123
scReClassify	78
HPiP	70
tripr	66
cytoKernel	81
monaLisa	174
TRESS	110
microbiomeMarker	401
biodbChebi	104
easier	148
CellBarcode	87
Cogito	70
miaSim	92
mfuzz	0
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bayespeak	0
OSCA	5
ramr	67
SCArray	104
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planet	216
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Travel	5
hca	77
miQC	126
MsBackendMassbank	96
PhenoGeneRanker	55
dce	88
OSCA.advanced	14
dir.expiry	3548
memes	225
CytoGLMM	114
condiments	118
cyanoFilter	75
wppi	50
MungeSumstats	1047
treekoR	84
XNAString	71
decoupleR	1173
cbpManager	72
BloodGen3Module	163
MQmetrics	28
MSstatsLOBD	71
vissE	120
HGC	80
KBoost	59
m6Aboost	64
DelayedTensor	71
scanMiR	106
FLAMES	99
FindIT2	74
mitoClone2	94
iPath	60
BentoBox	0
GEOexplorer	76
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traviz	74
methylclock	171
BioPlex	7
ProteoDisco	72
scTreeViz	70
pairkat	96
sparrow	295
MsBackendRawFileReader	82
biodbKegg	77
biodbUniprot	67
NxtIRFcore	12
synapsis	60
GeoDiff	89
pengls	58
netZooR	81
hermes	209
GBScleanR	91
PanomiR	80
CompoundDb	278
MuData	81
ASURAT	80
biodbNci	75
single	46
DepInfeR	63
terraTCGAdata	81
cytoMEM	113
extraChIPs	104
mbOmic	8
BiocBaseUtils	6723
katdetectr	80
proteasy	25
scMET	63
RedisParam	62
RcppParallel	24
MASS	373
zenith	150
globals	58
htmlwidgets	162
htmltools	342
FNN	158
stringdist	20
geosphere	11
goSorensen	80
sparklyr	11
bookdown	35
evaluate	414
furrr	13
tidytree	40
BiocManager	324
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R.devices	8
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Rfast	15
blob	60
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openssl	435
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restfulr	8
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Signac	15
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susieR	18
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IlluminaHumanMethylationEPICanno.ilm10b4.hg19	5
FlowSorted.CordBloodCombined.450k	9
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org.Rn.eg.db	9
ccdata	9
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coloc	19
FDb.InfiniumMethylation.hg19	5
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MALDIquant	5
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omada	64
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signature.tools.lib.v2.1	0
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Matrix	451
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plyr	111
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tidyr	249
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here	2
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sp	85
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timechange	188
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abe	0
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rvest	167
ggplot2	349
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sass	301
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ps	334
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modelr	29
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paws.compute	82
ggfun	69
cluster	88
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Rcpp	360
demuxmix	273
pRolocdata	9
IlluminaHumanMethylation450kanno.ilmn12.hg19	7
IlluminaHumanMethylationEPICanno.ilm10b2.hg19	5
renv	141
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progressr	39
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R.matlab	1
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SNPlocs.Hsapiens.dbSNP151.GRCh38	0
spatstat.core	13
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styler	58
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topicmodels	1
tmle	2
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uroot	0
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ABSOLUTE	0
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audio	1
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BB	1
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bigparallelr	0
biom	0
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mi	0
locfit	85
snow	8
commonmark	232
data.table	363
dendextend	32
utf8	184
digest	429
ellipsis	9
farver	150
org.Bt.eg.db	1
org.Ce.eg.db	1
org.Gg.eg.db	1
org.Cf.eg.db	1
org.Dr.eg.db	1
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CircSeqAlignTk	72
minqa	107
insight	18
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lixoftConnectors.2	0
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pd.hg.u133.plus.2	0
pd.mouse430.2	0
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eds	409
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DT	167
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yaml	275
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umap	12
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sn	13
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aroma.apd	8
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arrow	22
tidyselect	234
glue	207
future	206
tarchetypes	6
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isoband	37
BSgenome.Cfamiliaris.UCSC.canFam3	5
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EnsDb.Hsapiens.v86	8
venn	9
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ritis	0
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org.At.tair.db	1
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tensorflow	16
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lle	0
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DegCre	38
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pwalign	3420
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multistateQTL	35
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epiregulon	43
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roak	1
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PRONE	8
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OmicsMLRepoR	7
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illuminaHumanv1.db	1
DynTxRegime	1
PROscorer	1
bccaEndometrial	1
badminton	1
concrete	1
sparr	1
argusDS.signal.generation	1
IceR	1
compahradex	1
CompToxTools	1
gtreg	1
splice2neo	1
OhdsiShinyModules	1
annotationDBI	0
snpar	1
preprocessorCore	1
clariomdhumancdf	1
oncomarkerbase	1
signac	1
iptmnetr	1
deeptime	1
RProtoBuf	1
ergm.multi	1
patientProfilesVis	1
sctrnasform	1
hdf4r	1
poibin	1
nanopipeline	1
mgvc	1
abif	1
rnaseqGene	1
MicrobiomeAnalystR	1
ReporteRsjars	1
mdmb	1
NetCoMi	1
worcs	1
HRaDeXGUI	1
KEGGdzPathwaysGEO	1
rliger	1
polylabelr	1
Obigolem	0