qc.affy {simpleaffy} | R Documentation |
Generates Affymetrix style QC statistics as defined in Affymetrix' 'Data Analysis Fundamentals' handbook
qc.affy(unnormalised,normalised=NULL,tau=0.015,logged=TRUE, cdfn=cleancdfname(cdfName(unnormalised)))
unnormalised |
An unnormalised raw AffyBatch object to call qc stats on |
normalised |
The same one, processed using justMAS (contains scale factors etc.). If not supplied, then the object gets calculated internally. |
tau |
used by detection p value |
logged |
True if the data is logged |
cdfn |
The cdf name for the array - can be used to specify a different set of probes to the default |
A QCStats object describing the supplied AffyBatch
Crispin J Miller
## Not run: qc <- qc(eset,eset.mas) ## End(Not run)