| Function | Description | 
| binnest | Binary Random Effects Models with Two Levels of Nesting | 
| biv.betab | Bivariate Beta-binomial Regression Models | 
| biv.binom | Marginal Bivariate Binomial Regression Models | 
| capture | Capture-recapture Models | 
| catmiss | Marginal Probabilities for Categorical Repeated Measurements with Missing Data | 
| chidden | Continuous-time Hidden Markov Chain Models | 
| cmcre | Continuous-time Two-state Markov Processes with Random Effect | 
| cphidden | Changepoint Location using a Continuous-time Two-state Hidden Markov Chain | 
| gar | Generalized Autoregression Models | 
| gausscop | Multivariate Gaussian Copula with Arbitrary Marginals | 
| glmm | Generalized Linear Mixed Models | 
| gnlmix | Generalized Nonlinear Regression with a Random Parameter | 
| gnlmm | Generalized Nonlinear Mixed Models | 
| gnlmm3 | Generalized Nonlinear Mixed Models for Three-parameter Distributions | 
| hidden | Discrete-time Hidden Markov Chain Models | 
| hnlmix | Generalized Nonlinear Regression using h-likelihood for a Random Parameter | 
| kalcount | Repeated Measurements Models for Counts with Frailty or Serial Dependence | 
| kalseries | Repeated Measurements Models for Continuous Variables with Frailty or Serial Dependence | 
| logitord | Ordinal Random Effects Models with Dropouts | 
| marg.hom | Marginal Homogeneity Models | 
| nbkal | Negative Binomial Models with Kalman Update | 
| repeated | Non-normal Repeated Measurements Library |