Package: BiocBookDemo
Version: 1.7.0
Depends: R (>= 4.3)
Suggests: BiocManager, BiocVersion, BiocStyle, glue, sessioninfo, knitr
License: MIT + file LICENSE
MD5sum: 2c0d2e516d7fda6626e98785b11a7815
NeedsCompilation: no

Package: OHCA
Version: 1.5.0
Depends: R (>= 4.4),
Imports: HiCExperiment, HiCool, HiContacts, HiContactsData, DNAZooData,
        fourDNData, plyinteractions, GenomicInteractions, terra, Rfast,
        WGCNA, diffHic, strawr, multiHiCcompare, TopDom, GOTHiC,
        BSgenome.Hsapiens.UCSC.hg38, ggbio, cowplot, patchwork, fs,
        knitr, BiocStyle, sessioninfo
License: MIT + file LICENSE
MD5sum: b7831171ae846b973bdf2cba886def23
NeedsCompilation: no

Package: OSCA
Version: 1.19.0
Depends: BiocStyle, knitr, rebook, rmarkdown
Suggests: OSCA.intro, OSCA.basic, OSCA.advanced, OSCA.workflows,
        OSCA.multisample
License: CC BY 4.0
MD5sum: 2f81484650708a02c3f3b5a63c938e8a
NeedsCompilation: no

Package: OSCA.advanced
Version: 1.17.0
Depends: AnnotationHub, batchelor, BiocFileCache, BiocNeighbors,
        BiocParallel, BiocSingular, bluster, clustree, corral, densvis,
        DropletTestFiles, DropletUtils, edgeR, ggbeeswarm, ggplot2,
        gridExtra, igraph, iSEE, limma, msigdbr, mumosa, org.Mm.eg.db,
        PCAtools, pheatmap, rebook, rmarkdown, Rtsne, scater,
        scDblFinder, scPCA, scran, scRNAseq (>= 2.17.9), scuttle,
        SingleR, slingshot, snifter, TENxBrainData, tradeSeq, TSCAN,
        velociraptor, viridis
Imports: OSCA.workflows, OSCA.basic, OSCA.multisample
Suggests: rmarkdown, knitr
License: CC BY 4.0
MD5sum: a901a6db092e5f876d07e9d80d6322ae
NeedsCompilation: no

Package: OSCA.basic
Version: 1.17.0
Depends: AnnotationHub, apcluster, AUCell, BiocFileCache, BiocSingular,
        bluster, celldex, cluster, dendextend, dynamicTreeCut, GO.db,
        gridExtra, GSEABase, igraph, limma, mbkmeans, org.Mm.eg.db,
        pheatmap, rebook, rmarkdown, RMTstat, robustbase, Rtsne,
        scater, scran, scRNAseq, scuttle, SingleR, statmod, viridis
Imports: OSCA.workflows
Suggests: rmarkdown, knitr, OSCA.advanced
License: CC BY 4.0
MD5sum: f2707a2998b31f6b5c37511ac6bc0fbf
NeedsCompilation: no

Package: OSCA.intro
Version: 1.17.0
Depends: batchelor, BiocFileCache, BiocManager, bluster,
        DropletTestFiles, DropletUtils, gridExtra, knitr,
        LoomExperiment, R.utils, readxl, rebook, rmarkdown,
        rtracklayer, scater, scran, scRNAseq, scuttle,
        SingleCellExperiment, uwot, zellkonverter
Suggests: BiocManager, rmarkdown, knitr
License: CC BY 4.0
MD5sum: fa8cd66b7cdcea7c76d86b67af96ac5d
NeedsCompilation: no

Package: OSCA.multisample
Version: 1.17.0
Depends: batchelor, BiocSingular, bluster, DropletUtils, edgeR,
        gridExtra, igraph, MouseGastrulationData, pheatmap, rebook,
        rmarkdown, Rtsne, scater, scran, scuttle, SingleR,
        TENxPBMCData, TSCAN, uwot, viridis
Imports: OSCA.workflows
Suggests: OSCA.basic, rmarkdown, knitr
MD5sum: 78e0d2f7558fcccbbffa1a07b7c46241
NeedsCompilation: no

Package: OSCA.workflows
Version: 1.17.0
Depends: AnnotationHub, batchelor, BiocFileCache, BiocNeighbors,
        BiocParallel, BiocSingular, bluster, celldex, cluster,
        DropletTestFiles, DropletUtils, dynamicTreeCut, edgeR,
        EnsDb.Hsapiens.v86, gridExtra, HCAData, igraph, limma,
        org.Hs.eg.db, org.Mm.eg.db, pheatmap, rebook, rmarkdown,
        scater, scPCA, scran, scRNAseq, scuttle, SingleR, viridis
Suggests: BiocManager, rmarkdown, knitr
License: CC BY 4.0
MD5sum: 60ff96b9e53a749d4a82e015454c9292
NeedsCompilation: no

Package: SingleRBook
Version: 1.19.0
Depends: AnnotationHub, BiocNeighbors, BiocParallel, BiocStyle,
        bluster, celldex, gridExtra, igraph, knitr, ontoProc, pheatmap,
        rebook, rmarkdown, scater, scran, scRNAseq, scuttle, SingleR,
        TENxPBMCData, viridis
MD5sum: 7913f58d7b6f34056835f8dc32f4804c
NeedsCompilation: no