## ----options, include = FALSE-------------------------------------------------
knitr::opts_chunk$set(
    collapse = TRUE,
    comment = "#>"
)

## ----load_package, eval=TRUE, message=FALSE, warning=FALSE--------------------
library(MetaboAnnotatoR)

## ----filepath, eval=TRUE------------------------------------------------------
msp_path <- system.file("extdata", "MassBank_example.msp", 
                        package="MetaboAnnotatoR")

## ----setwd_to_run, eval=TRUE--------------------------------------------------
LibDir <- tempdir()

## ----run_function, eval=TRUE, warning=FALSE-----------------------------------
mspToLib(msp_path, LibDir, noise=0.005, mpeaksScore=0.9, mpeaksThres=0.1)

## ----sessionInfo--------------------------------------------------------------
sessionInfo()