736355ca478b6d9c364957a4244b5e6f *DESCRIPTION
4fe869ee987a340198fb0d54c55c47f1 *LICENSE
7711d34c4bacbff9fd03f84b9999e7ad *NAMESPACE
a7a6df70bc83605b3aa0ffe9b11699f7 *R/allocateCells.R
38fed9863be6657310d82acd8e055c07 *R/cellsInRegion.R
8bbf13e5163d9b21e8db48b2d53ea157 *R/computeDensity.R
83e33a78dd803bb075e6d3aef196d2d1 *R/computeDensityHex.R
4218895c38087e9b9286dcc48594aba5 *R/contour2sf.R
7667cf3dad19e2d67c774d7b899b0b98 *R/corDensity.R
50248d928990deec3a4efae32f258532 *R/findNbrsGrid.R
3c68dfd3de43942014ed6eb88fea1ef3 *R/findNbrsSNN.R
ab93476ecf0c467ba371efb733aa0d69 *R/findNbrsSpatial.R
36279b4fad509f35cda9aee45cbcc0a9 *R/findROI.R
b3682635328617d1acbd1dfcd43f9757 *R/getClusters.R
1f11cf235a2054cc5ef55aa7a2bffca1 *R/getContour.R
c9c639b667a8e1ac05ce84955b8baf4a *R/getContourRegions.R
177d641d82f8ecd9f9cb19fb44fe5780 *R/getHVG.R
6a3644951a12398695e08c1d70012538 *R/getNiche.R
a4de0dea9c36be58b0329211ea0fba89 *R/grid2sf.R
5b589c1c55ee4fce0984b451334d914e *R/gridDensity.R
ac7cac0937f690e609efcc8536fbb93d *R/gridSPE.R
2c8550e0219b6c40e6d7faf87f640b78 *R/mergeROI.R
cbffea66f431a7b8cb92f8f575c9f1a0 *R/moran.R
05785803fdc80d72c9fd19ae014e148f *R/normalizeAssay.R
bcf5cad037cf46110587611a084e83c2 *R/plotCellCompo.R
e4f423ac4708a851be2228a9c00c7739 *R/plotContour.R
4d1318f7d6469cbae70ca38f340f8764 *R/plotContourRegion.R
d1cb58e1d4107b2d97e35a312ae7d00a *R/plotCorHeatmap.R
e7cf3eb22f65866be035b7c1fb546d22 *R/plotDR.R
f10523411bbda67acb91479373493aa9 *R/plotDensCor.R
69c73441c5829f380fc0cd82546887a2 *R/plotDensity.R
df99acd9517cb6951b12557c769fa1cb *R/plotDots.R
4f0b6c947367743563925bb023e877be *R/plotGrid.R
bf8f3df75979e7d7b72d4f4955eb33e4 *R/plotImage.R
904731e62db1c48e8a42f60b10af0128 *R/plotLISA.R
bdc77a3ab80184c1644dc87e4abee9f2 *R/plotLISAscatter.R
e23a30973342e7ea0288f9dde2553b04 *R/plotROI.R
dd2af3476ce9ac6e997605efddbc7c62 *R/plotSpatial.R
58054782c2ebb5c32b682e2a21641d8f *R/plotViolin.R
9618db9a02134a63c967939e96c48cf0 *R/postSelRegion.R
5ec39de46f41122b7ef81e11efafabca *R/readST.R
189e1b74f3246d55ffa4a370ca303be8 *R/realignVisium.R
192aa49ea65adc4ad6f6f0d1cfd2c432 *R/removeROI.R
09e5d9ec45301a3a63212997a00862f6 *R/runPCA.R
2b7861b15bd488c2558809d8304adfaa *R/runUMAP.R
58ce9f544ed837e2825a17bac5acb163 *R/scider-package.R
28abfb81ed2774242b0e4d554af33faf *R/selectRegion.R
8992d7bfc2fc7b3d034b50581f977e75 *R/spe2PB.R
57f1c45ca241ef9cf4ff5098f4f28bef *R/subset.R
cccfb3850a1a24ae866c8a5a020eeb35 *R/utils.R
13c728169e765d2da6680160cf988e28 *README.md
dc4d5d456e2b45ac6d0476385d31e506 *build/vignette.rds
efa0eb53a143ca8958901942165654c2 *data/xenium_bc_spe.rda
0e612a0cfb6769c1efa4c39061aff98b *inst/NEWS.md
2c7690f7df4d1c79c4e2cdf5743095a0 *inst/doc/scider_userGuide.R
84522a84ac930c2f2f71585938c4a774 *inst/doc/scider_userGuide.Rmd
de5dd37d8833c7a9afc3bf0ae9202915 *inst/doc/scider_userGuide.html
4b9168b6210f19ed0ed028ca1d18ccbe *man/allocateCells.Rd
6673458b89babeec807721038642360e *man/cellsInRegion.Rd
08d6947b15ebeb9a0f482a980515931d *man/computeDensity.Rd
296aec04144752e01ddf7ee1dccb81e7 *man/computeDensityHex.Rd
8ee77c83079524dcc46bb202fa60428d *man/contour2sf.Rd
20d33b1f577b0ab40c7f4c7d6eb342c0 *man/coord_hash.Rd
da48c25fab0cff3214644c7942cf5157 *man/corDensity.Rd
555d0981674c97d1fba1de3151686d29 *man/figures/scider_sticker.png
377ac386510015af18d93fce5a48865c *man/findNbrsGrid.Rd
89a9eeb4e8558289e7222f29a4527a01 *man/findNbrsSNN.Rd
4e23f05b79b2f64d96e33b134801b288 *man/findNbrsSpatial.Rd
70e912ff1b4b63bcd94691f480fe2065 *man/findROI.Rd
c85763ef0e37cb2a2e6d5a834b54606d *man/getClusters.Rd
a7228292443f4e74a95424b6451edffc *man/getContour.Rd
3ebc59dd7404c08673918bacf338b970 *man/getContourRegions.Rd
4a34521de7654800995b228b1275303c *man/getHVG.Rd
9ed8bd9f633ff3cf20be160898d467d7 *man/getNiche.Rd
029539eb031f68fe79c243e5f14cd1b0 *man/globalMoran.Rd
6d5f4e69d7a7ab2df788bdd6008ded72 *man/grid2df.Rd
a58c584d3b90099f45594b03765d1d3a *man/grid2sf.Rd
49870891e3792227a11c9f8f229b2cc3 *man/gridDensity.Rd
0e64c6751a74513a0097213c90df6ad7 *man/gridSPE.Rd
fb33d35c88cadf679bb25dee9886eb99 *man/localMoran.Rd
03864cc653498e789fe2779d4d5a0d9b *man/mergeROI.Rd
4a46050bb7ce5fb1c70f2b6ac01da6c4 *man/normalizeAssay.Rd
9ce9fd8cd807076d9ec6a2ef1c1d58a2 *man/plotCellCompo.Rd
40049e7ea62cffa25ec22cc615b420f6 *man/plotContour.Rd
8c409bb4e21d44f3845895404d3f814e *man/plotContourRegion.Rd
bca4599322357bbdbbfa65721959b572 *man/plotCorHeatmap.Rd
39cbb8a989583054378cd83722952f9a *man/plotDR.Rd
03026106aaea46b076f0c1e9d2401f38 *man/plotDensCor.Rd
2e4d89d56186629287acad84fcb8b2b6 *man/plotDensity.Rd
028650e4e5dfa7f3153df839184c0965 *man/plotDots.Rd
f730a2e7a5063b5b5bde24f186272d89 *man/plotGrid.Rd
423df11a4b79d3abfb8270aa8c0806fa *man/plotImage.Rd
acb84334410108d317a13d9c6655a0a7 *man/plotLISA.Rd
69ff4f23f073ce0bd558bd82414f4146 *man/plotLISAscatter.Rd
763d9c73b9b9a5e88b784e9e9c845fa8 *man/plotROI.Rd
4416bf36fafebf44fe3cfebe165b1c18 *man/plotSpatial.Rd
c71f18dff425e7d3a8014310040faf0d *man/plotViolin.Rd
937965b83b294b0a0327246a7f0487b0 *man/postSelRegion.Rd
5b3754d5f9e35416579e7f487eb29112 *man/readProseg.Rd
8b41a4fd707084130a7a5241298f2fc2 *man/readVisium.Rd
5a74306616bbcd200f5d6851718371d3 *man/readVisiumHD.Rd
2035e1d8b687dd0ba001c355fcfe38b2 *man/readXenium.Rd
3bc39f2efaac678897bbe3da62fcd98e *man/realignVisium.Rd
a022da201a6368d21927d94b6806b7c2 *man/realignVisiumHD.Rd
2f935324e7288f7d99e07418f8d4cd79 *man/runPCA.Rd
242447ed14c48025190c25d708cf8ed7 *man/runUMAP.Rd
dc51cb7ae4a12abed835717733538adf *man/scider-package.Rd
482fd48f70bb9e5bca5e1e7da6ff6728 *man/selectRegion.Rd
23fc47610b35f3f19e84bcf6682f59a3 *man/spe2PB.Rd
ca1daa23b12030528b6b95e955a58733 *man/sub-SpatialExperiment-ANY-ANY-ANY-method.Rd
de468931d8bb686420d9602538f62993 *man/update_bound.Rd
4bfe20577f868366b3b748c02f812af1 *man/xenium_bc_spe.Rd
72bc65f23315b831ab08358addb323b4 *src/C_findSNN.cpp
865ad6b15a3c4578620b9215ee0631c7 *src/C_globalMoran.cpp
eac125b1d9b4aaa0f466d84a899034b5 *src/C_localMoran.cpp
98b4a8d7c39a70efbe246e6e0f91d038 *src/init.C
30d227ce454b8727748f49d408aa0ad9 *src/rand.cpp
4e5e569ff76a5731055f62bd04d1e12a *src/rand.h
8518aee7c031cf46b5b59d31f61dee68 *src/utils.cpp
ab4f0aa7c9725c555f925bcd55d04234 *src/utils.h
f474307f9103941edadb47fca40b81fa *tests/testthat.R
618bb8b7d6a7282392b1f3731484604f *tests/testthat/test-allocateCells.R
852bc0de7151af9b5392822986bd963b *tests/testthat/test-corDensity.R
c7a7703b8ae1b8c1893dc4a6bfbfc064 *tests/testthat/test-findROI.R
7a819ddb56cc8e3890bcc40dfb57723b *tests/testthat/test-getContour.R
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5e8019fe052d79dd49999472567b83df *tests/testthat/test-mergeROI.R
3826a80696b6377230a30eccc8039475 *tests/testthat/test-plotCellCompo.R
404e8937879ee1f0dbe42b0777916c9d *tests/testthat/test-plotContour.R
80f3f21530bc004f06ee4730f7a7cfab *tests/testthat/test-plotCorHeatmap.R
c0ca86690096ece29e36fed710d9397d *tests/testthat/test-plotDensCor.R
afa896284cc54636ff6735e370f21f87 *tests/testthat/test-plotDensity.R
a04e52797b24eae6a6afeda3f2109076 *tests/testthat/test-plotROI.R
2326604c3c90476db8c574f355b00ec9 *tests/testthat/test-plotSpatial.R
10f587b507bda187449f63e1e3e1caa7 *tests/testthat/test-postSelRegion.R
3ba1bca2aad092ab37617ec2024848f5 *tests/testthat/test-selectRegion.R
09b9446872a86577a2ef3dcdd77b7416 *tests/testthat/test-spe2PB.R
84522a84ac930c2f2f71585938c4a774 *vignettes/scider_userGuide.Rmd
