e72760d74f8f865115a314262685c3b0 *DESCRIPTION
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
89c8862f6366e0ebba3f0cb568bdfdba *NAMESPACE
498e5e206aa987d8f172af739db5458c *NEWS.md
8ef1e8e0f87e20ffe99fe8fbce769604 *R/data.r
87ca5aca7d82c43b512e0a81d7757453 *R/main.r
38d2d1405eb99b32ef22616b88c1d894 *R/plotting.r
df6cc46bc7fae1a55b713f3d5065b35a *R/scECODA-package.R
72548c3fbd508a86f2c146aa90812247 *README.md
545b899878d9c3467d2d0c6faf140564 *build/vignette.rds
09781ff856678970ef3f280ccba8e04e *data-raw/Create_readme_figure.rmd
7affabef109a8424c2e8d8f1efefd9d5 *data/example_data.rda
a9e9a136799cd12ef347f98c890c8d68 *inst/doc/scECODA.R
742fb764b8628a650ac22c335ba4f42c *inst/doc/scECODA.html
9258d576004b3ab5703c68c0d1953ab9 *inst/doc/scECODA.rmd
f379a6e9e59e5cf8c514ff8f885c4aec *man/calc_anosim.Rd
f3984160cfb89cac08a1ce6a36ed4cb7 *man/calc_ari.Rd
53711076419285f4874ffe6ad5256626 *man/calc_clr.Rd
09e008323913bd307229ed647db0290d *man/calc_freq.Rd
4c2f4780e8148127bc7b13060f4ca104 *man/calc_modularity.Rd
d3f84663483c3662e032f4c55969ee61 *man/calc_sil.Rd
360ef5841ecd898f7c909adc45d5c15c *man/calculate_pseudobulk.Rd
930330bbd27e209cbdb3dec16052da93 *man/compute_KNN_from_dist.Rd
6f8a48a1daf65d7107e33c9fc7d38b93 *man/compute_snn_graph.Rd
f0f5147980b3f4c3c65d0bbc35e51593 *man/create_long_data.Rd
52c9cfc7703e1dec9303cb4b179b4e7a *man/deseq2_normalize.Rd
9c0ae602342735f338baaccc603cfd9a *man/ecoda.Rd
00d8d3be6b6e0db9cf07277c37084d1e *man/ecoda_helper.Rd
daa6fd1ce7f62c64479a98bc2697642a *man/example_data.Rd
1b0be5519e0d7f7f6b4ee7fc1fb9b490 *man/figures/GongSharma.png
175a141db0639e90f4cfd8194a3ce65a *man/find_hvcs.Rd
3bcffcb4982d36d78605273ec0a65401 *man/get_celltype_counts.Rd
e131021fe04895cbdc250dcb2c364fe9 *man/get_celltype_variances.Rd
ca95469801728fc4a36e2c0b496a664f *man/get_ecoda_assay.Rd
c3df3a1c3dd7bcd2e2517953340ce6ea *man/get_hvcs.Rd
b97818f99cb1feaabdd543fd9f3af361 *man/get_sample_metadata.Rd
93656e6fc2d4dfea78edb7d3dd1e4085 *man/plot_barplot.Rd
831b62f0f1aa5204e9f9aad207834ea6 *man/plot_boxplot.Rd
14bc643a339d97fb578801961ad1a3ef *man/plot_corr.Rd
41b844f52a97e1c666c98cd00050ce6a *man/plot_heatmap.Rd
204e45b003e4b5a8c99d39a2e394757f *man/plot_pca.Rd
e3fe826652fe041d5c2bed66e1db6ee5 *man/plot_pca3d.Rd
f0e778054efbae24d364f31ba7d7f26d *man/plot_varmean.Rd
58d7ec28bbbd9dc41bb1cfee078e2b4f *man/replace_zeros.Rd
1cf357ea9165e8ea97f38fd211b569b3 *man/scECODA-package.Rd
c1948363d4b8197e20bbd550878fc404 *tests/testthat.R
6182bd0de64ccc80d6743308da0ac61b *tests/testthat/test_constructor.r
c1baa8f1dbece7ffbd130aecfb144397 *tests/testthat/test_data_extraction.R
f6e847ba9cef6a19f2721da0c013cc09 *tests/testthat/test_hvc.R
8808d6713bc3020250d1c72d28f5e414 *tests/testthat/test_metrics.R
e4ebc5df5aae37e0e1755d8b1ecb1485 *tests/testthat/test_plotting.R
499a65a384a62b8d48f973403dd861a7 *tests/testthat/test_pseudobulk.R
5818de80c66590080aa14ac37ff5e3d7 *tests/testthat/test_transformations.R
4467997f25fe65ff6576fae6d7f16694 *vignettes/references.bib
9258d576004b3ab5703c68c0d1953ab9 *vignettes/scECODA.rmd
