8ddfea55eac4cae129d0a3648f4caadf *DESCRIPTION
bb7aacd64498705cbbca82b5e2adef75 *Dockerfile
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
831023c7ea0de5624f30a35a70c3c0ea *NAMESPACE
bb901eb493650962e0b79e1dc4d89bb7 *R/atac.R
22f75929127da41409c68a03d00a74d9 *R/atac_processing.R
b962ea2ffd29a21a64fcb63a0ded3f26 *R/clustering.R
36f1eca0a298de4282fd5604bfb1f8d7 *R/computeDoubletDensity.R
281df17643c953845c17bc53271a08ab *R/doubletThresholding.R
d76beedac3586b203cb2b29c69d839bf *R/enrichment.R
22a0484a37ee81ed24480f633a9c5b73 *R/findDoubletClusters.R
77efcb718c93217e3822ab9f617506c2 *R/getArtificialDoublets.R
5654233d81702dac99008fd4166b6c71 *R/getFragmentOverlaps.R
58fd65ffabac1be07b58953509ec5704 *R/misc.R
8b4cd3b8d064d8afa7b9d3525223a4be *R/plotting.R
d308914b876406dc27e09436954901ff *R/recoverDoublets.R
b98e87df30e333df0b37ed8e5a83de6b *R/scDblFinder.R
3fd4ef727d15c14c955323c74ca52bd5 *README.md
1f3d82c37b02fef4446711ab9ebac9d9 *build/vignette.rds
4e3aca4b8d906aeb9f5869800ea7509c *inst/CITATION
be0c8cf3a0ce2db585aa09b89fe8f850 *inst/NEWS
1a7dba539b3cdcc11e0097cee1d5f2f5 *inst/doc/computeDoubletDensity.R
eef14ea15e8da7f89aea93d73efacbc9 *inst/doc/computeDoubletDensity.Rmd
7bd504c0ddfbb6285556ba4c78a56fd0 *inst/doc/computeDoubletDensity.html
bcdf6a081e06586a5778c1cca5f79f9f *inst/doc/findDoubletClusters.R
7b7ac77e09a67e5b0680774f184b81e7 *inst/doc/findDoubletClusters.Rmd
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b5f4bec3f2fe27bb1b14710bfea25176 *inst/doc/introduction.R
8d2adf7d35b42a39b2ed4c2e435bc5c8 *inst/doc/introduction.Rmd
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a547c0f5213329b1b9bb505b0fd62f06 *inst/doc/recoverDoublets.R
14b4cc4eff3abcf6faff74313469d7f9 *inst/doc/recoverDoublets.Rmd
5267553d7ea5db607c54b35c0b076c61 *inst/doc/recoverDoublets.html
91c3e18613c9a0a897f5dfcef139cc4f *inst/doc/scATAC.R
7716cbd4712b92fa3588fef543c4bb88 *inst/doc/scATAC.Rmd
00ae663a83f80b42fa8ff84be0776f7a *inst/doc/scATAC.html
ac7a0174ce2c02a47184d00f044c0f52 *inst/doc/scDblFinder.R
7d8ae5f47fd01e461cabe603028564d9 *inst/doc/scDblFinder.Rmd
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3edcc1867e316bdc44c5604227cc9835 *inst/docs/scDblFinder_comparison.png
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58dcc208f9e2f6f57ecf950935b6f342 *inst/extdata/example_fragments.tsv.gz
82a42c7e0076ac0844e9a18c06c10cc5 *man/TFIDF.Rd
13392625f503c73a773336c1968bab41 *man/addDoublets.Rd
7049b450d50ed8f3646cf26c06245d34 *man/aggregateFeatures.Rd
389295148af92c761bb6a74344693a66 *man/amulet.Rd
3aec3c1b6bacd6df619693ec012277f9 *man/amuletFromCounts.Rd
7d971954654c69ee1adfcbbb328af41c *man/clamulet.Rd
02c36b5cfeda55c54523c01cbde8f976 *man/clusterStickiness.Rd
8f2270dc8ed6b8446a395e854b35546a *man/computeDoubletDensity.Rd
e592856d8169821dd921478c716766df *man/createDoublets.Rd
92c563a65822cb75c5162695da8897e4 *man/cxds2.Rd
4e06183743b9d496e4706e27bd33667d *man/directDblClassification.Rd
1e549c3e77366a3b3f65bce04509ce0b *man/doubletPairwiseEnrichment.Rd
c1050c8fa343c3af83b9447a1db87c2d *man/doubletThresholding.Rd
d3aaf1c916c7339125a446dfbdaf2cd6 *man/fastcluster.Rd
91ab7854603230f76c238133f3d46c2e *man/findDoubletClusters.Rd
661b301bbf39dfc72e7bd97170bb78cf *man/getArtificialDoublets.Rd
aabe8a063c6fc20c49429f8b6c3abd01 *man/getCellPairs.Rd
2bc44945d6ff8fc307d3c36d190036f5 *man/getExpectedDoublets.Rd
302c73e9a93e3aef3b353664fe3a54c0 *man/getFragmentOverlaps.Rd
718e35893fc0776d562d243f9bcad3b5 *man/mockDoubletSCE.Rd
a86eb0f8db511861ba7e287413571f55 *man/plotDoubletMap.Rd
c90f888cc63d18970755e96ac747db5f *man/plotThresholds.Rd
dac5fdef37c3995647b4485797e9c07d *man/propHomotypic.Rd
1450845e73511d1316c60e3677c0f5df *man/recoverDoublets.Rd
c819723ca5e88eb8b1c58a83f0d16ef3 *man/scDblFinder.Rd
66041aab3e0618a6e9c857cc2ed40ade *man/selFeatures.Rd
fb1a27f87b8b4a8979a688fafc7f206c *tests/testthat.R
3ab18149c1b5508f2cb7899cc4350a41 *tests/testthat/test-computeDoubletDensity.R
48f4d349952e192c7673aa057f37d611 *tests/testthat/test-findDoubletClusters.R
bc930645e236b62b4d68696f8a7e863b *tests/testthat/test-recoverDoublets.R
db037e63aaeb0e658f4596a34a6a0a37 *tests/testthat/test-scDblFinder.R
eef14ea15e8da7f89aea93d73efacbc9 *vignettes/computeDoubletDensity.Rmd
7b7ac77e09a67e5b0680774f184b81e7 *vignettes/findDoubletClusters.Rmd
8d2adf7d35b42a39b2ed4c2e435bc5c8 *vignettes/introduction.Rmd
14b4cc4eff3abcf6faff74313469d7f9 *vignettes/recoverDoublets.Rmd
7716cbd4712b92fa3588fef543c4bb88 *vignettes/scATAC.Rmd
7d8ae5f47fd01e461cabe603028564d9 *vignettes/scDblFinder.Rmd
