ddd337d6ac7d022c61894dc931d1444d *DESCRIPTION
16c640d003782d3cfe0a7b8e736420be *NAMESPACE
fa73f05a3556c7a73b7ac5bccbe276be *NEWS.md
2086540ee1b4bf1372fab4074735cdf0 *R/RcppExports.R
aba0b63cc31bad24269aa0c3102d9803 *R/assert_sufficient_length.R
2ef5ca4caeff65342213a4c94074eea2 *R/barcode_frequency.R
bdb79c5262f9f1b0ffcd503f3f2d56ef *R/cutoff_select.R
f4da97e20acacd2bc96f199a270fdc4d *R/demultiplexer.R
7b4f0fb867f812faff94a31b22b7427f *R/helper-transformer.R
c09b02a510e989214ee33311def56794 *R/match_filter.R
953f0cd6dca150af6f4068cfbc5c6f77 *R/match_summary.R
6fc29abe1bf41f4fecc337749cf08ab5 *R/posDemux-package.R
c825c42008d4a4777384b0e5912ec9d0 *R/random_mutate.R
a3d9eb164e53f14550e81a30f850011f *R/streaming_callbacks.R
3cab81b786eb1d07c7cdc09b9a42e3e8 *R/streaming_framework.R
ea4aae810baaedc9ab888ef56b4af383 *R/table_join.R
cee29097e1563f7614c07c6a1fa48a01 *README.md
569305be21444d93139728ddba418e24 *build/vignette.rds
d9583c78bac571422be80eac67c7d77e *inst/REFERENCES.bib
3283ebf5e3c0c82fb866d2bb95e7a49a *inst/doc/posDemux.R
bdaffbfc1bb7311f650ca5db270cdc80 *inst/doc/posDemux.Rmd
9a27e3d45a57de1a9850aaa22029c867 *inst/doc/posDemux.html
c8a012e742bcdaf0581593093591268d *inst/doc/streaming.R
747592532c5d315c8ba9064b8bf82fcb *inst/doc/streaming.Rmd
cb433409c88132ddb817545516acb171 *inst/doc/streaming.html
d895a053f6c1f66fb14c3e169632bab2 *inst/examples/cutoff_conversion-examples.R
6a390ac7061b1ddd024bfabc2eb9d8cf *inst/examples/demultiplexer-examples.R
61608ed31f9bd84c47069e5232aa9efe *inst/examples/freq_plot-examples.R
c1e79eefc227b022887811920c4e28fd *inst/examples/freq_table-examples.R
894f9ae9ca0929f359c0ad474d29d963 *inst/examples/interactive_bc_cutoff-examples.R
420b61aabdeaeb7707d75dff1606e2ab *inst/examples/match_filter-examples.R
64fce2c41bc2c6cd3ad4f3de499fa050 *inst/examples/row_match-examples.R
69cf15498161257d10623a9e1f84478f *inst/examples/streaming-examples.R
e86ab1601dfea125f5dbb6694399ccdc *inst/extdata/PETRI-seq_barcodes/bc1.fa
c4eba26dc0fad4d3a30c8ca51d41dff8 *inst/extdata/PETRI-seq_barcodes/bc2.fa
b8ba9d3dd321279882b61cc1c1fcdbec *inst/extdata/PETRI-seq_barcodes/bc3.fa
f9a3055c5ca2533162dd6e58da9ab0d2 *inst/extdata/PETRI-seq_forward_reads.fa.gz
a705e33b8b4c0734ab6d6df4e215fb0c *inst/extdata/PETRI-seq_forward_reads.fq.gz
e0368d99e41eea2c90c5d93374511f2a *inst/scripts/barcode_download.R
b93bbd520d463dc70504e8fe05b59745 *inst/scripts/convert_to_fasta.R
ad1abe19df6c502c86918964c463795c *inst/scripts/generate_sample_reads.R
19ca061dae8e428e0ed878dfe77e234e *man/bc_to_freq_cutoff.Rd
506993957b2f0d2dd4fada4f33ff4d11 *man/combinatorial_demultiplex.Rd
f5670048ee9201659c8d0be7c3622aba *man/create_freq_table.Rd
4a8497d49dc8f4563da2f8769f42b611 *man/create_summary_res.Rd
c8ade98c73dea3a5c6c3976ff3f8cdb3 *man/filter_demultiplex_res.Rd
02e850e638925cb62930ae7e33432c9c *man/freq_plot.Rd
caa4b5ad9a51e20d005143c116f73dbe *man/interactive_bc_cutoff.Rd
7c3caac71a3ac05f24693372be1c5131 *man/posDemux.Rd
7b75becfce46813ab2aa42facd3f7119 *man/row_match.Rd
217c55d53ff791fde93607b10c87f80b *man/streaming_callbacks.Rd
c51172498536ac97ad1a2433e2fa3fe6 *man/streaming_demultiplex.Rd
f1f4685a8f0afb74e19c344a86d86b22 *src/Biostrings_stubs.c
ebe97d589c22890593f21f88c2f3df11 *src/RcppExports.cpp
e1d14f1389ae5cfdf72b014a861075e1 *src/count_hash_table.cpp
721bc01700ff1a4ede13fa3fa954c43f *src/hamming_match.cpp
9a321434c412736a10cd4959a531e1c1 *tests/testthat.R
5f241a2d8d07784a7ca9c411200eb731 *tests/testthat/helper-demultiplexer.R
ce81e2e6be9d73c8a9873b2dd2955e12 *tests/testthat/helper-parameters-demultiplexer_highlevel.R
5bef6a04f9e5cc5e8254060e044a9ca3 *tests/testthat/test-count_table.R
5f560b3302de94ea77640df52beb3460 *tests/testthat/test-cutoff_conversion.R
2a22dd3bccfacf96e3ebe879a56c36e6 *tests/testthat/test-demultiplexer_highlevel.R
023ca00cd2cb11448a59a435f836818e *tests/testthat/test-demultiplexer_lowlevel.R
0ec1678f53b77219a21448829e2cd5f3 *tests/testthat/test-empty_stringset.R
8d86a77b08e060bd4b99a84790ece890 *tests/testthat/test-frequency_table.R
a615a82fbf520d7bf4930072a991aa0a *tests/testthat/test-multiple_input_streaming.R
f2d93331faa576143078b83bbec0fac1 *tests/testthat/test-mutate_barcodes.R
9b7ab4534c59a3d379dd238be707bafe *tests/testthat/test-poisson.R
1029a461c5d2c394e2d036d428416390 *tests/testthat/test-streaming.R
156a6b1084a22d7d7fb5e1ef5bc38bcb *tests/testthat/test-transformer.R
bdaffbfc1bb7311f650ca5db270cdc80 *vignettes/posDemux.Rmd
747592532c5d315c8ba9064b8bf82fcb *vignettes/streaming.Rmd
a338203aefdef9f20ff2c7863f0d635f *vignettes/streaming_structure.drawio
e9c0dc7cdf32ae022b01492e9ffa461c *vignettes/streaming_structure.svg
