5322b40eb5977caad2ceab4678c28500 *DESCRIPTION
d46c237bdb2d76c2fa402c159aa31cde *LICENSE
b00b3c31d629d6d8062c9be91b14249b *NAMESPACE
86b2087730ace10cba7a3d28d33e051a *NEWS
403513dec173e05feaa811a5984a609d *R/fit.R
59543580a52243cc4c8b46b5728194a5 *R/maaslin3.R
903080c6e81036c92863f44993f59979 *R/utility_scripts.R
2cc308bab688452578cab026ccb08605 *R/viz.R
1dd42d9be403f3f23f36f07a16880b14 *README.md
5313549a60533192629c5495a7fe71d5 *build/vignette.rds
9f45a7e9e6f7a5f9705f83434a7997ac *inst/doc/maaslin3_manual.R
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338c74d5a0d9bb880ccd3a3cdb476bfc *inst/doc/maaslin3_tutorial.R
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ea25953be4bc1d32be5f25d73e3f1e51 *inst/doc/maaslin3_tutorial.html
1d81ebad1f5a6baac0c2a8072881519f *inst/extdata/HMP2_metadata.tsv
f12221840c0a583a34f666b88ba2a9bf *inst/extdata/HMP2_taxonomy.tsv
3c8b287550011aac0905663aa1333fea *inst/extdata/abundance_spike_in_ex.tsv
bb79f2a60e95075b403f381b3e41ad26 *inst/extdata/abundance_total_ex.tsv
1015768a737924a005f24ec786fac8d0 *inst/extdata/metadata_spike_in_ex.tsv
fed1712e82ba0b73d06c42bd1ff65b08 *inst/extdata/metadata_total_ex.tsv
7fabbc8e9abb47c5aa9d37cdcd3a2d20 *inst/extdata/scaling_factors_spike_in_ex.tsv
202e13e0ee4371ed1cc180e4b13cca4b *inst/extdata/scaling_factors_total_ex.tsv
1869fe75e3ec87f92c73229298e028ef *inst/script/data_generation.md
bc70dfc66e1aad8b7a513da8b78ec723 *man/maaslin3.Rd
358a570156cce19c0a2d50b0e2d0c759 *man/maaslin_check_arguments.Rd
c8774a59d6b13ed62f0914befd34d156 *man/maaslin_check_formula.Rd
5a8e5a1ff810831e5b9c3eb36ba1c46c *man/maaslin_compute_formula.Rd
35d7eb86642d438308baa8490832437e *man/maaslin_contrast_test.Rd
f7b8eaa469f91648c5013d6d97096380 *man/maaslin_filter.Rd
f9a098af4790aa060658b22168c5aab4 *man/maaslin_fit.Rd
e4c9ff1041ce16f32bc637117cefecd6 *man/maaslin_log_arguments.Rd
ecb0d93be158021fd6f28eeba720d196 *man/maaslin_normalize.Rd
9a5fdd187110d65ea0da5ac5c40ee0de *man/maaslin_plot_results.Rd
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4e90fb3955118699a1807200d84cedf6 *man/maaslin_process_metadata.Rd
378d5598e43c3416c5f2971ae9977ae9 *man/maaslin_read_data.Rd
fcb8e9d60dbc7eb1da7e4b0aeb14359c *man/maaslin_reorder_data.Rd
5613745e0b3f996c83bde75bb7a0e7e2 *man/maaslin_transform.Rd
8e791ecf086de934ae4b36c8b171ec3d *man/maaslin_write_results.Rd
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f8c1f04c207ac2686eac4b45802d8893 *man/preprocess_dna_mtx.Rd
dbe6125314cc81528e2c1bd975639a56 *man/preprocess_taxa_mtx.Rd
51e191f759b6150388ad8f2b02c8e02c *tests/testthat.R
8e93196972874b8402a3e192d179f4e9 *tests/testthat/expected_results_run1.tsv
67bf7e7a19ef8d9aa8082a43bfdfb3c6 *tests/testthat/test_Maaslin3.R
8dc4b3ac50142a9f4a5069d8be11485c *tests/testthat/test_bypass_small_group_warning.R
797ad8b286438fc2cf06e4b1f2c997e5 *tests/testthat/test_check_missing_first_factor_level.R
53246fec9b5e389745c10efe94ffb07f *tests/testthat/test_collapse_migration.R
76888125c65aecb5fa0d6463e064b3e5 *tests/testthat/test_evaluate_only_abundance.R
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4a52ab952ad2015dcc8227f41ed328a3 *tests/testthat/test_maaslin_check_arguments.R
35f8ea9fb5cbe7b96a17336a38a5019f *tests/testthat/test_maaslin_check_formula.R
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3286016b1bb9053755b19b6385d61a98 *tests/testthat/test_maaslin_log_arguments.R
9a554a2591ba7fb13254d017814814d3 *tests/testthat/test_maaslin_normalize.R
f52cd6546cd3d2b492f242fd630d875e *tests/testthat/test_maaslin_plot_results.R
a3c06838a0ac1d828b2fdca7e43f778f *tests/testthat/test_maaslin_plot_results_from_output.R
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9f5c1487fd9a967fd158f0d7e573afbf *tests/testthat/test_maaslin_read_data.R
7dddda09c3447cb479f9e27786485a5f *tests/testthat/test_maaslin_reorder_data.R
519e50c38d07cb669f1b6a3bc39ad013 *tests/testthat/test_maaslin_transform.R
d0857b06ceed78b80429448b89bd3535 *tests/testthat/test_maaslin_write_results.R
f8902e9ac43d5a66118f8eb9cb44f152 *tests/testthat/test_namespace_imports.R
1700d85ac9ce6f40c800e88d199bdbb2 *tests/testthat/test_no_dplyr_in_tests.R
6aa0974865a9d9cd7863d96840cea164 *tests/testthat/test_no_ifelse_in_r_source.R
8933d552683704da20bfaf3f3b9a0351 *tests/testthat/test_no_self_triple_colon.R
d38eeba0f0bbc304e66cdc58013dab36 *tests/testthat/test_no_stale_imports.R
0a66a946dd31303693631f1ac3bb1204 *tests/testthat/test_parallelization.R
36cbdd6b74838864b35ccb4be1564daf *tests/testthat/test_plot_shape_circles.R
557f38a5b94b29119c83ba5d228ec8d8 *tests/testthat/test_preprocess_dna_mtx.R
1af93d2969a1a225c00f7875390ec3dd *tests/testthat/test_preprocess_taxa_mtx.R
0292f970252a182ba26dd2a97b0b59ba *tests/testthat/test_scoped_optimizers.R
6e8b10ef132acada37fa0e84db093709 *vignettes/maaslin3_manual.Rmd
d6bedb57a19353c42e999adce4304ed3 *vignettes/maaslin3_tutorial.Rmd
