063527c99dda8c8221b65f742ff5aa6a *DESCRIPTION
eba786a0778e1e1da02558ed94bb84d6 *NAMESPACE
89c01519d63f6af0940f23a16da675ae *R/CNregions.R
571028924effc9a8d06b0841fdbd1804 *R/compute.pod.R
f720621536d977238058bbe3f0f4e1b2 *R/iCluster.R
314b9ffe09c7056d2c8fe76bcf31d851 *R/iCluster2.R
bd61dc0ba0a1846223143e0abc25f6ab *R/iCluster2b.R
3bc27b9c44d0c30986565fd841f13f67 *R/iClusterBayes.R
5c581e8c1d9f360d9072421b58d22f7f *R/iClusterBayes2.R
270f00e7a1b1502874b83f0708344617 *R/iClusterPlus.R
9647c01f8152e78e997f0c0cae1f562e *R/iClusterPlus2.R
98d64a62e034ccd3cf1ae8daf07ed4fc *R/pcaVarPlot.R
d7753273becf23c7d83d5d91569a210a *R/plotHMBayes.R
67f74380c6b78016f930bff4d769eb3d *R/plotHeatmap.R
3b29f033d86a004922285dd87d542ad2 *R/plotRI.R
8e2460f234fe8e65816ee803925a581c *R/plotiCluster.R
7a46c37e908c11ecbf25e316dc939237 *R/tune.iCluster2.R
f98ad81449573eb4270a072172926b53 *R/tune.iCluster2b.R
44e46c1ba9db440f3780e3be9ec99c47 *R/tune.iClusterPlus.R
1bc2ba525816ee558f67518e2c2fa8bc *R/utility.R
1a72d5a445ea977299687a233fdd3767 *build/vignette.rds
8eb2b53997ee7c7453f71f37e49758ad *cleanup
6ed4acde2e6961dbbfe044302329a22b *configure
2b7b56ee06a72dd8e4894b1513f6bc2b *configure.in
89c3ab28c46ae05457cb1184c7143387 *data/UM.rda
0a58ca4e518b0900a49362e33971e5a3 *data/breast.chr17.rda
2a7aecd51262ddd600cdfe0a7d279eb0 *data/coord.rda
d93e69f703f3e1831e0461b09c13e638 *data/datalist
981135f4321f70dc9b3a0f5dc8aec857 *data/gbm.rda
bacef725c2f5b3f7679161dccec33844 *data/glp.rda
6a7c57f972957a5fe76d4e1f5ff5e889 *data/variation.hg18.v10.nov.2010.rda
f0fd4c8cf176e1ffe9c0c174004d4192 *demo/00Index
8ec82810e6d94657e73ae98ebcd106c6 *demo/demo.R
8bf18e8a09fb91469dc28b9907204d61 *demo/iCluster.demo.R
70cfc3fe7c21aedb6e07a0fdccd703bb *inst/NEWS
4de99c1b3524166b4446690fd58deba1 *inst/doc/Tutorial_iCluster2b_singleCell.Rmd
5bf4e1422f0520144db3ebb895498d1d *inst/doc/Tutorial_iCluster2b_singleCell.html
73f418420a3d25b8648b3464c87031cf *inst/doc/Tutorial_iClusterBayes2_GBM.Rmd
bcd882f2360c5cdd8ce09b38dda1d8c8 *inst/doc/Tutorial_iClusterBayes2_GBM.html
58b03f73c765fce5d5ed3d9dc0cd7d6b *inst/doc/Tutorial_iClusterPlus2_UM.Rmd
66fec7d1121ac1dd7c508999d8ef2bbd *inst/doc/Tutorial_iClusterPlus2_UM.html
9dd33a6ff416439a00bc9bdd864d7c71 *inst/doc/iClusterPlus.Rnw
a445ce44e40cb24cb558e8e3f0f07028 *inst/doc/iClusterPlus.pdf
7567ef3fb255d7aa8c34f22bf301ca6c *inst/doc/iManual.pdf
08a657b09045163a119ae76b76c8858f *inst/unitTests/test_iClusterPlus.R
11c8b59be5d1b78435b5b65e9760032c *man/CNregions.Rd
b13b8e6e5167d98b1a921f42ad9a263d *man/UM.Rd
727594e54054e360565b18717140ab25 *man/breast.chr17.Rd
335561a5836c11891165d0dc7c54a7bb *man/compute.pod.Rd
2bb9e20654f3258d475c58dc1549b0a6 *man/coord.Rd
6bed16a2c8a7a52956555a029397e585 *man/gbm.Rd
d3e527903b7aa5b392fdcda08aa151bc *man/glp.Rd
a32ea406cf51dda036e2ff368b13261d *man/iCluster.Rd
0dee35d506ba50e44d72ebf0e3b05ed3 *man/iCluster2.Rd
cedb77ced2d992f4460a7210b84cb1d4 *man/iCluster2b.Rd
8cf68504aba06c97952b221640129288 *man/iClusterBayes.Rd
6d94b65f9aafc558669ccd70e0b34afc *man/iClusterBayes2.Rd
d481f1dace86a9dc6c64149e80e98ac1 *man/iClusterPlus.Rd
080134a0991cb623b9236ae1c5c9e61e *man/iClusterPlus2.Rd
791c72be4f6358a021e969922c4ede17 *man/pcaVarPlot.Rd
8c9ba7a49e49b7dacfeb13cd1ada8a79 *man/plotHMBayes.Rd
21f0cfd6cbf42167ea0548a2c8cfdd95 *man/plotHeatmap.Rd
f65be1ae453fd407c08cf0a7b2af9fe3 *man/plotRI.Rd
b2b7b0cf73a022eefc99507d9f27fa71 *man/plotiCluster.Rd
22acd04caa477bfb9ed0201142cc37d0 *man/tune.iCluster2.Rd
b9ad831260a9f362c953e23d87d0be50 *man/tune.iCluster2b.Rd
9a2be495303c3fa5eaf4b2d9e6a1ccfa *man/tune.iClusterBayes.Rd
9a5b0b3c13b393ab2a3ae7017ffa6cc5 *man/tune.iClusterPlus.Rd
bdacc7418b25d172d6919f2516ad3233 *man/utility.Rd
9038f87140d25b630241a46cff395ab9 *man/variation.hg18.v10.nov.2010.Rd
2009bc08a7ee7016b87c78d1a3a8a279 *src/Makevars.in
3f3ae2ab0a0d751802e06e156d7578e0 *src/Makevars.win
54fb9dbbb06da205cd546be48bc2b4ab *src/iClusterBayes.c
db96011782bb2232a66fd5612a853acf *src/iClusterPlus.c
adab88932d1391efbeb9be33d4fc5505 *src/iClusterPlus.h
b98cba8358c6981bf3a5114ba5849f4f *src/newGLMnet.f90
c51c6c514adb79dde09014fd7184ae52 *tests/runTests.R
9dd33a6ff416439a00bc9bdd864d7c71 *vignettes/iClusterPlus.Rnw
