5f08f1be261d7707c1af57ed78879132 *DESCRIPTION
2ded1bd22cff94c8081d41ff7873c713 *LICENSE
2f3da1716a2569e33e98b8e3764a2d2e *NAMESPACE
842ea2e8dc62863bca67bc09160b355f *NEWS.md
dd367ffec06e8edff51e315afb195be3 *R/decemedip-package.R
a51abd3281950acd98fd58b81f70f28a *R/decemedip.R
d1a5c2544b764078ae6b0f4fbd5d8407 *R/getRoiReadCount.R
7093236133d783ec88cdde310732ede2 *R/getSummaryOnPi.R
94361cf0a28d6f4839eb691c492969d3 *R/makeReferencePanel.R
5c54e8c556df2c75e47580eb3f213435 *R/plotDiagnostics.R
d9e297458d49f777507e2a0910e20a74 *R/stanmodels.R
b2574d6f5cddbe8c615acb173e19e4da *R/sysdata.rda
5049386db105a434a2eea338cacfbccd *R/utils.R
4467028c32393e91228739e5fe3150da *README.html
27893965e02262ab8195a845e706d0b1 *README.md
fcd381a9bd1b381312646405ee8ec9bb *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
5fdedca26c8830d7bb06aa1c4a634204 *configure.win
97a23c33bae339e0f87e079b79da9918 *data-raw/hg19-reference-anc-sites.R
e0561bbc022bddc86f5547cc8d43d8d0 *data-raw/hg19-reference-cts-sites.R
9267c9fef79b54962da8efadd0ddf6b6 *data-raw/hg19ToHg38.over.chain
37b2f4a2edbfb3b12135d1e396aaa886 *data-raw/hg38-reference-sites.R
47fca8c4db8214cc53a53f8ab97ca169 *data-raw/sample-data.R
f845d31c0cda9ac7571a3bd6a7e95981 *data-raw/small-examples.R
eef66d8f39f1f6cf18b199d3a09bcf97 *data/example.hg19.ref.anc.se.rda
c3e71d5ce4236e5b06de45a48c90b0b2 *data/example.hg19.ref.cts.se.rda
b2574d6f5cddbe8c615acb173e19e4da *data/example.pdx.counts.anc.se.rda
350107110bbcddb2e34eefb60a9f8610 *data/example.pdx.counts.cts.se.rda
ee18c081689fea75371ca60ffbee821f *data/hg19.ref.anc.se.rda
8c92eb165ae7ab5753360c92f77b4382 *data/hg19.ref.cts.se.rda
936b160e5504cd9eaa6475495ef552d6 *data/hg38.ref.anc.se.rda
ce6f0957b20ada999dc4e072b8a598f7 *data/hg38.ref.cts.se.rda
f93b119cc8558730cf09dd0a972235bb *data/pdx.counts.anc.se.rda
69baee41e5daed6692d41a00078d13b8 *data/pdx.counts.cts.se.rda
1c09d744c25ae02d2e17d171a90fa993 *inst/doc/how-to-use-decemedip.R
ba6010244e427b6a37f525b7417dcb48 *inst/doc/how-to-use-decemedip.Rmd
0ae2e3dbf8b889161b8d1352d2ee453f *inst/doc/how-to-use-decemedip.html
5416faa806c82a4165f271dfa3d98e30 *inst/figures/method_main_figure.png
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
2c19e291f50f89d23792896e61cfcdcf *inst/references.bib
a0520cdb4e1969ccd1d78879da8eb46b *inst/stan/decemedip0.stan
ffaebb46637681ee1e7e4dca6de053e7 *inst/stan/decemedip1.stan
58871bd77ee7d4606cc8bf478d6c1f9e *inst/stan/include/license.stan
225a100d55abd040102ad756542f4b61 *man/decemedip-package.Rd
342cb8c90e7fe7d051e6bb2d3e1bc9ac *man/decemedip.Rd
e8eadb999c9059ef19372db28913fbc2 *man/example.hg19.ref.anc.se.Rd
27f5b44b59ae5b82b33c4beb1df7a1e0 *man/example.hg19.ref.cts.se.Rd
5b51392d570517336d21d0bf8c9e3c43 *man/example.pdx.counts.anc.se.Rd
8c6dc223cba9381b70e958a177292704 *man/example.pdx.counts.cts.se.Rd
03a155c4b5eda5cbeb7f362a2d9dcd46 *man/getRoiReadCount.Rd
2654e18bfc6270a851b318b017126aa3 *man/getSummaryOnPi.Rd
03bb8df971443f408645cd63c5f65f4f *man/hg19.ref.anc.se.Rd
30a5e222a6491f0332be32569f8464f1 *man/hg19.ref.cts.se.Rd
224e44fe99bad3f97afedf8494c1fa90 *man/hg38.ref.anc.se.Rd
929a67aa6e5dd60b5b12d42465d92bc6 *man/hg38.ref.cts.se.Rd
75ce7126ddbcffe4fe2b709edc3ec62d *man/makeReferencePanel.Rd
c046382e57931ef54c07521cdfa5ce33 *man/pdx.counts.anc.se.Rd
6c8d927b80712cdca26ce2d05c966525 *man/pdx.counts.cts.se.Rd
5e7f64d7d91c55f482c74c3850f5a131 *man/plotDiagnostics.Rd
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
d53292596f09a0027bf9ea94d6895a84 *src/RcppExports.cpp
c34dcbf5a285e474f7f2c86bd79696ec *src/stanExports_decemedip0.cc
a5233845bdf8b11478be52a029525f34 *src/stanExports_decemedip0.h
aa4c58bf53a9c7025f20274c58b51479 *src/stanExports_decemedip1.cc
4e3462648281609b3ad23c92968d9b29 *src/stanExports_decemedip1.h
6c8aaf6d962087e320f3095170fb4906 *tests/testthat.R
fc79920509cac7051821114026b03c9d *tests/testthat/test-decemedip.R
ba6010244e427b6a37f525b7417dcb48 *vignettes/how-to-use-decemedip.Rmd
d6a1e1104f3044f55058445db83e0ea9 *vignettes/rsconnect/documents/how-to-use-decemedip.Rmd/rpubs.com/rpubs/Document.dcf
