Package: augere.core
Version: 0.99.3
Date: 2026-04-11
Title: Core Utilities for Automatically Generated Reports
Description: 
    Provides utility functions for automatic generation of reports in the augere framework.
    This mostly involves parsing and dynamically editing Rmarkdown files, controlling inputs into the augere pipelines.
    Each pipeline generates and executes a self-contained Rmarkdown file for a common bioinformatics analysis;
    see downstream packages like augere.de and augere.screen for examples of some analysis pipelines.
Authors@R: person("Aaron", "Lun", role=c("cre", "aut"), email="infinite.monkeys.with.keyboards@gmail.com", comment=c(ORCID="0000-0002-3564-4813"))
License: MIT + file LICENSE
Imports: utils, grDevices
Suggests: testthat, knitr, rmarkdown, BiocStyle, limma, edgeR, airway,
        S4Vectors, SummarizedExperiment, jsonlite, alabaster.base
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
biocViews: WorkflowManagement, ReportWriting
URL: https://github.com/augere-bioinfo/augere.core
BugReports: https://github.com/augere-bioinfo/augere.core/issues
git_url: https://git.bioconductor.org/packages/augere.core
git_branch: devel
git_last_commit: bb14163
git_last_commit_date: 2026-04-11
Repository: Bioconductor 3.24
Date/Publication: 2026-05-07
NeedsCompilation: no
Packaged: 2026-05-07 20:19:23 UTC; biocbuild
Author: Aaron Lun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
