9dda5a6193f12db867364052642b5f32 *DESCRIPTION
b392177a175a2ebdce749b2b705c1320 *NAMESPACE
5fd8a07d643c652d0d76b521d3d55820 *NEWS.md
16c00c30b661d612bea5994689e98079 *R/AllClasses.R
91489c3cff9c397a421fcd73aa87d0c9 *R/AllConversions.R
2fcab7a0c933c5996aee89c39f4c7755 *R/AllGenerics.R
5265f6d4359cb477d64f611787ae8feb *R/COTAN-estimators.R
db0b4cc9ccf0e8e258a2e3985a090467 *R/COTAN-getters.R
5eb809f9fa24cf00e636ac890692999c *R/COTAN-modifiers.R
525161d19ecdae51abe52dc96290478c *R/DEAOnClusters.R
81e3960e4f1e5e5e32ce4ea72f5570f4 *R/ECD-plot.R
68f90df0500c9fed4621d00b844440d2 *R/GDI-plot.R
ce986b96c6a446c079e7389568939357 *R/UMAP-plot.R
401cf3a3c42a7a097bd4c6507bc657f9 *R/UTCheckers.R
0187df2cb94a967dacef39beb3222678 *R/automaticCOTANObjectCreation.R
0c4e4a421e8ec68efc2500078f3b3a5b *R/calculateCoex-method.R
707182639faac621e66952a0aa7959c5 *R/cellsUniformClustering.R
a8b93c31697ff9a72d8b55cae324535a *R/checkClusterUniformity.R
a39f92c861898d2bb8ef0ab96e07157c *R/clean-method.R
e35e7a4e949b899e4296046057e8feb0 *R/clean-plot.R
f7d825e07ff79e4748fdb10e437329b1 *R/clustersDeltaExpression.R
2a690cc0cc9868093eefb93f2627c775 *R/clustersMarkersHeatmapPlot.R
937d2bc4a611a98150eecc2b3ab89ee4 *R/clustersSummaryPlot.R
99e8c8dbdddf6495fecd3d2554a787eb *R/data.R
80bdfab3773bbcb2301c05fb3f6f3e9a *R/establishGenesClusters.R
42e1113f7ed9bb916d66dd9c57955c29 *R/findClustersMarkers.R
3aa36cae7a51fb671e6cf9b9914d6987 *R/geneSetEnrichment.R
dfb84f4d8553f1bbdad85d2c3f2677f4 *R/genesStatistics.R
4eeeb8ef1fc689ac7bc214d0874bb72c *R/heatmap-plot.R
e5e9b66bb4bc5f792c32847e034003ae *R/librarySize-plot.R
b2205b0f5fd010a204ca954baa55c747 *R/mergeUniformCellsClusters.R
e05d6fc0f5ce27d7f47dd4bf59eb41b0 *R/mitochondrialPercentage-plot.R
8d39ce36c0cf83cddae82b567ee82758 *R/numericUtilities.R
6cee3254cc64f02eb489bce8a6f425b5 *R/reorderClusterization.R
df2177240c0747d1ae663708ef11b7c8 *R/scatter-plot.R
a836cb93a1b67f3536196978dafd7c20 *R/utilities.R
2a1d93219e9fac1f5364c4bbc66e2b8a *R/zzz.R
94e6d21163e3faf0fb79f03a940c7566 *README.md
868266664b593d1fb410884c1f13969d *build/vignette.rds
595f9214bad582690e3bae1bcafba8c1 *data/ERCCraw.rda
0e807416a239f94975353f0ca95929cd *data/raw.dataset.rda
178a6ecf860256469328d3c12389f76f *data/test.dataset.clusters1.rda
a73dd3ceaef02ddf28b52cf2d51eef76 *data/test.dataset.clusters2.rda
2c3ad85a3ddd8c2dbdd676f5e0f57617 *data/test.dataset.rda
51cdf0e254c416acd5decc0cf5dac427 *data/vignette.cells.origin.rda
6226a9321bca6f0d82b21bf5c02ff9c3 *data/vignette.merge.clusters.rda
721b7ecde70f01562eef929ab96c11d0 *data/vignette.split.clusters.rda
92fce26556513698c162905b8a842007 *inst/WORDLIST
1c8e1c11dc512251ca47ff6e880624db *inst/doc/Cleaning_GuidedTutorial.R
7490cec02ca49e6a5428858468baeac2 *inst/doc/Cleaning_GuidedTutorial.Rmd
573aed0130cbaf2f556f8e2a473f1c24 *inst/doc/Cleaning_GuidedTutorial.html
43d73fea8b6eb7e998aa866850b99062 *inst/doc/DiffExprAnalysis_GuidedTutorial.R
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7ce58885d47f9965e1a88fa6b978ca01 *inst/doc/DiffExprAnalysis_GuidedTutorial.html
34c75b379707dfea0447999c7e9c1ed3 *inst/doc/GenesClustering_GuidedTutorial.R
8f3f954fe02859fb621aa69470b800ad *inst/doc/GenesClustering_GuidedTutorial.Rmd
96c401067c0f3818aa008aadbb6eec88 *inst/doc/GenesClustering_GuidedTutorial.html
f8ff9844403e7c6f0453fac560abe155 *inst/doc/UniformClustering_GuidedTutorial.R
f5de31512f4cb25139dd5379fec5d8c9 *inst/doc/UniformClustering_GuidedTutorial.Rmd
89bd3e907e58a771bb80c8be8b6e9907 *inst/doc/UniformClustering_GuidedTutorial.html
ee75c16adaa6f9314f4b6749c499ca1e *man/COTAN-class.Rd
57cedaa6d9ae8ea3c5ab2c7195a92fd1 *man/COTAN_Legacy.Rd
c6380dffa127e091118353d09265de1a *man/COTAN_ObjectCreation.Rd
5fbb0e6b63a8c060ab4ca03d3119c10d *man/CalculatingCOEX.Rd
edc118d977890a900898683ae7773ae2 *man/ClustersList.Rd
2abeb6040ab7f36c0093cd85bb40a060 *man/Conversions.Rd
9cdbc36fa863862985dcf28cefedbacb *man/Datasets.Rd
7d953242b2bcd729d97826d906eb8530 *man/GenesStatistics.Rd
26b0a16ed6f81b7af8131eb2169a5ad9 *man/HandleMetaData.Rd
c38b400a4aa0391b6e48bdba6478a246 *man/HandleStrings.Rd
08c4bffa2683d841b478f88805226c5d *man/HandlingClusterizations.Rd
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0609d9963473861858ecb6f4e623c567 *man/HeatmapPlots.Rd
16d4b2c2dbf5dc7373c7ba7eb7f2d8c8 *man/Installing_torch.Rd
6409655dd41b725c2f01a868150326a7 *man/LoggingFunctions.Rd
ad31732543ace549bca7e19f87f20a5f *man/MultiThreading.Rd
ad836f6e20979c3af718c5295898ea89 *man/NumericUtilities.Rd
29ae68e8faef1e65deec0656d5954cc1 *man/ParametersEstimations.Rd
4280d98efc41724cd256c51e4d58d528 *man/RawDataCleaning.Rd
910a6d98c2d8c642a297490aafa459ee *man/RawDataGetters.Rd
0ef66bfd212fa2b813637340d9082ff8 *man/UniformClusters.Rd
b8751ae79fea1447b6e7de6128d77c0d *man/UniformTranscriptCheckers.Rd
8f416ea18a4edc9a6e3d8fa572c14400 *man/getColorsVector.Rd
acfd2c4a9b3347e61d6869c009251c22 *tests/outputTestDatasetCreation.R
2926098c9266960cfaf9613ac0af809e *tests/spelling.R
f431cad1258c651a61e54b5873668dc3 *tests/testthat.R
ea2d0961a26a70558c8b32d06c33cff2 *tests/testthat/GDI.test.RDS
5618a4433a05e8fc5a00682cb55cb7f8 *tests/testthat/cells.names.test.RDS
2daa6bdfe9d2cd411aca4c5a9a3c15f2 *tests/testthat/coex.clusters.test.RDS
de7435db845a967334f0958e9d35342a *tests/testthat/coex.test.RDS
ece8076afcbb33dfb3a1460242059d32 *tests/testthat/dispersion.test.RDS
b8c49bebb7e5b3442da927a2d505abec *tests/testthat/genes.coex.space.test.RDS
417faa01a2fabdd059a906eb71f6c8fd *tests/testthat/genes.names.test.RDS
4fad7e3f43bfc852ce46af81c4508502 *tests/testthat/lambda.test.RDS
4a03977633cb37a6cae24868fba15fca *tests/testthat/merge.clusters.test.RDS
41e09492858cb6fda8aea7f20b5559dd *tests/testthat/nu.test.RDS
2c91eda1b9a3496cd71482250cd93471 *tests/testthat/pca.genes.clusters.test.RDS
6c4e18aca4e11baaaf3e60e472db2ffb *tests/testthat/pca.raw.test.RDS
b436fe7022e1acb7297bc2185c39d065 *tests/testthat/pvalues.clusters.test.RDS
45ca14c8dd521f3af7acc95d6db4b3f2 *tests/testthat/pvalues.test.RDS
b074a8bfbb6aac23ad006d065aa56832 *tests/testthat/raw.norm.test.RDS
85495c6fb3b9b56d00a4e1379d1f4fc8 *tests/testthat/split.clusters.test.RDS
218a2a6d813933b31c69ac9fd7a18dc6 *tests/testthat/test-AllClasses.R
7e46eda7fa653bbb951ad94a42c0e3e4 *tests/testthat/test-COTAN-estimators.R
53f24f3b723a8e7259bf971225a340ae *tests/testthat/test-COTAN-getters.R
af0ffb88eba06692ba3dad6bf9a80238 *tests/testthat/test-COTAN-modifiers.R
4f0ab791cc962c071c5b8f41021fe00f *tests/testthat/test-calculateCoex-method.R
34071c4d5170564d94534f61eb7b7bd2 *tests/testthat/test-cellsUniformClustering.R
149e442fab1442c360ee1e0a4c9f6e77 *tests/testthat/test-clean-method.R
252012fbb7d3ad710e78f743438a4001 *tests/testthat/test-convertSingleCellExperiment.R
371f11efc5f95a1cc1497064d5c4f385 *tests/testthat/test-establishGenesClusters.R
ea87e118b936e8fcca043ec3f02ca8c0 *tests/testthat/test-mergeUniformCellsClusters.R
1ca3e2475836bcb37b676bb38f52e69f *tests/testthat/test-plots.R
bd9114c1248de2b947a0caec328917db *tests/testthat/test-utilities.R
7490cec02ca49e6a5428858468baeac2 *vignettes/Cleaning_GuidedTutorial.Rmd
c49fd989e78d00968234ba4f1d47dbe3 *vignettes/DiffExprAnalysis_GuidedTutorial.Rmd
8f3f954fe02859fb621aa69470b800ad *vignettes/GenesClustering_GuidedTutorial.Rmd
f5de31512f4cb25139dd5379fec5d8c9 *vignettes/UniformClustering_GuidedTutorial.Rmd
