Changes in version 1.1.4                        

  - the argument imageCol is now not longer needed in reconstruction
    functions
  - assingCellsToStructures for large datasets and 1 sample

                        Changes in version 1.1.3                        

  - added sticker and preprint reference

                        Changes in version 1.1.2                        

  - switch from GenomeInfoDb to new Seqinfo package

                        Changes in version 1.1.1                        

  - added new function minCellTypeStructDist
  - added possibility to reconstruct everything around an object
    (complement = TRUE)
  - relaxed assertion of having at least two cells of each cell type in
    reconstruction to having at least one of one cell type

                        Changes in version 1.0.1                        

  - fix problems in when assigning cell to structures

                       Changes in version 0.99.9                        

  - Clarification of the transformation used in the diabetic islets
    vignette.

                       Changes in version 0.99.8                        

  - Small changes in the vignettes and description.

                       Changes in version 0.99.7                        

  - Small updates in vignettes.
  - Updated news file for 0.99.6

                       Changes in version 0.99.6                        

  - Improved parallel computation by reducing memory overhead by using
    data frames within mclapply instead of SpatialExperiment objects.
  - Introduced new functions .SPE2df and .SPE2ppp to convert to
    different objects for reducing memory overhead.

                       Changes in version 0.99.5                        

  - New Analysis Functions: Added assignCellsToStructures,
    calculateBorderMetrics, calculateCellTypeFractions,
    calculateDistanceToBorder, calculateDistanceToTissueRegion, and
    calculateTissueRegionFractions to improve spatial and structural
    analysis.
  - Simulated data set: Introduced a new data set for testing and
    demonstrating package capabilities.
  - Vignette update: Expanded documentation to include multi-sample and
    condition-based analysis.
  - Bug fixes & optimisations: Addressed various issues and improved
    performance.
  - Code cleanup: Enhanced readability, maintainability, and structure.
    Consistent use of camelCase for function arguments.

                       Changes in version 0.99.4                        

  - Set number of cores to 1 to pass build on Windows.

                       Changes in version 0.99.3                        

Second round of review

  - Changed required R version to >= 4.4.0
  - Fixed typos
  - Updated news file to match versions

                       Changes in version 0.99.2                        

Addressed first review

  - Added R version and selective imports
  - Functional programming to avoid code repetition
  - Added unit tests and input checks
  - Updated the vignette with installation info

                       Changes in version 0.99.1                        

Initial Bioconductor submission