rrvgo
This is the development version of rrvgo; for the stable release version, see rrvgo.
Reduce + Visualize GO
Bioconductor version: Development (3.23)
Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity.
Author: Sergi Sayols [aut, cre], Sara Elmeligy [ctb]
Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>
Citation (from within R, enter
citation("rrvgo")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rrvgo")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Annotation, Clustering, GO, Network, Pathways, Software |
| Version | 1.23.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (5.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | GOSemSim, AnnotationDbi, GO.db, pheatmap, ggplot2, ggrepel, treemap, tm, wordcloud, shiny, grDevices, grid, stats, methods, umap |
| System Requirements | |
| URL | https://www.bioconductor.org/packages/rrvgo https://ssayols.github.io/rrvgo/index.html |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), shinydashboard, DT, plotly, heatmaply, magrittr, utils, clusterProfiler, DOSE, slam, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/rrvgo |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rrvgo |
| Package Short Url | https://bioconductor.org/packages/rrvgo/ |
| Package Downloads Report | Download Stats |