isobar
This is the development version of isobar; for the stable release version, see isobar.
Analysis and quantitation of isobarically tagged MSMS proteomics data
Bioconductor version: Development (3.23)
isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT. Features modules for integrating and validating PTM-centric datasets (isobar-PTM). More information on http://www.ms-isobar.org.
Author: Florian P Breitwieser <florian.bw at gmail.com> and Jacques Colinge <jacques.colinge at inserm.fr>, with contributions from Alexey Stukalov <stukalov at biochem.mpg.de>, Xavier Robin <xavier.robin at unige.ch> and Florent Gluck <florent.gluck at unige.ch>
Maintainer: Florian P Breitwieser <florian.bw at gmail.com>
citation("isobar")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("isobar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Bioinformatics, ImmunoOncology, MassSpectrometry, MultipleComparisons, Proteomics, QualityControl, Software |
| Version | 1.57.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (14 years) |
| License | LGPL-2 |
| Depends | R (>= 2.10.0), Biobase, stats, methods |
| Imports | distr, plyr, biomaRt, ggplot2 |
| System Requirements | |
| URL | https://github.com/fbreitwieser/isobar |
| Bug Reports | https://github.com/fbreitwieser/isobar/issues |
See More
| Suggests | MSnbase, OrgMassSpecR, XML, RJSONIO, Hmisc, gplots, RColorBrewer, gridExtra, limma, boot, DBI, MASS |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/isobar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/isobar |
| Package Short Url | https://bioconductor.org/packages/isobar/ |
| Package Downloads Report | Download Stats |