DeMixT
This is the development version of DeMixT; for the stable release version, see DeMixT.
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
Bioconductor version: Development (3.23)
DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.
Author: Zeya Wang <zw17.rice at gmail.com>, Shaolong Cao<scao at mdanderson.org>, Wenyi Wang <wwang7 at at mdanderson.org>
Maintainer: Ruonan Li <RLi10 at mdanderson.org>
Citation (from within R, enter
citation("DeMixT")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("DeMixT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Classification, Coverage, GeneExpression, Microarray, Sequencing, Software, StatisticalMethod, TissueMicroarray |
| Version | 1.27.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (6.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0), parallel, Rcpp (>= 1.0.0), SummarizedExperiment, knitr, KernSmooth, matrixcalc, rmarkdown, DSS, dendextend, psych, sva |
| Imports | matrixStats, stats, truncdist, base64enc, ggplot2 |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DeMixT |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DeMixT |
| Package Short Url | https://bioconductor.org/packages/DeMixT/ |
| Package Downloads Report | Download Stats |