CTdata
This is the development version of CTdata; for the stable release version, see CTdata.
Data companion to CTexploreR
Bioconductor version: Development (3.23)
Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.
Author: Axelle Loriot [aut]
, Julie Devis [aut]
, Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("CTdata")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CTdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics |
| Version | 1.11.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (2.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2) |
| Imports | ExperimentHub, utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/UCLouvain-CBIO/CTdata/issues |
See More
| Suggests | testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CTdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CTdata |
| Package Short Url | https://bioconductor.org/packages/CTdata/ |
| Package Downloads Report | Download Stats |