zebrafishRNASeq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see zebrafishRNASeq.
Zebrafish RNA-Seq Experimental Data from Ferreira et al. (2014)
Bioconductor version: 3.9
Gene-level read counts from RNA-Seq for gallein-treated and control zebrafish.
Author: Davide Risso
Maintainer: Davide Risso <risso.davide at gmail.com>
Citation (from within R, enter
citation("zebrafishRNASeq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("zebrafishRNASeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("zebrafishRNASeq")| Pre-Processing for the Zebrafish RNA-Seq Gene-Level Counts | R Script | |
| Reference Manual |
Details
| biocViews | Danio_rerio_Data, ExperimentData, RNASeqData |
| Version | 1.4.0 |
| License | GPL |
| Depends | R (>= 2.10) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RUVSeq, sva |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | zebrafishRNASeq_1.4.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/zebrafishRNASeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/zebrafishRNASeq |
| Package Short Url | https://bioconductor.org/packages/zebrafishRNASeq/ |
| Package Downloads Report | Download Stats |