simpIntLists
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see simpIntLists.
The package contains BioGRID interactions for various organisms in a simple format
Bioconductor version: 3.9
The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.
Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay
Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>
citation("simpIntLists")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("simpIntLists")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("simpIntLists")| simpIntLists | R Script | |
| Reference Manual |
Details
| biocViews | Arabidopsis_thaliana_Data, ExperimentData |
| Version | 1.20.0 |
| License | GPL (>= 2) |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | ibh |
| Imports Me | |
| Suggests Me | GeneNetworkBuilder |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | simpIntLists_1.20.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/simpIntLists |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/simpIntLists |
| Package Short Url | https://bioconductor.org/packages/simpIntLists/ |
| Package Downloads Report | Download Stats |