mtbls2
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see mtbls2.
MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)
Bioconductor version: 3.9
Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.
Author: Steffen Neumann <sneumann at ipb-halle.de>
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>
citation("mtbls2")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mtbls2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mtbls2")| MTBLS2 Processing and Analysis with xcms, CAMERA and export to MetaboLights | HTML | R Script |
| MTBLS2 Processing and Analysis with xcms3, CAMERA and export to MetaboLights | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, MassSpectrometryData, RepositoryData |
| Version | 1.14.0 |
| License | CC0 |
| Depends | R (>= 2.10) |
| Imports | |
| System Requirements | |
| URL | http://www.ebi.ac.uk/metabolights/MTBLS2 https://github.com/sneumann/mtbls2 |
See More
| Suggests | xcms(>= 3.0.0), CAMERA, Risa(>= 1.0.0), knitr, Heatplus, pcaMethods, sp |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | IPO, yamss |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mtbls2_1.14.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/mtbls2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mtbls2 |
| Package Short Url | https://bioconductor.org/packages/mtbls2/ |
| Package Downloads Report | Download Stats |