VariantToolsData
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see VariantToolsData.
Data for the VariantTools tutorial
Bioconductor version: 3.9
Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla at gene.com>
Citation (from within R, enter
citation("VariantToolsData")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("VariantToolsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("VariantToolsData")| VariantTools Example Data | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, HapMap, SNPData, SequencingData |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), VariantAnnotation(>= 1.7.35) |
| Imports | BiocGenerics, GenomicRanges |
| System Requirements | |
| URL |
See More
| Suggests | VariantTools(>= 1.3.4), gmapR(>= 1.3.3), BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | VariantToolsData_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/VariantToolsData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/VariantToolsData |
| Package Short Url | https://bioconductor.org/packages/VariantToolsData/ |
| Package Downloads Report | Download Stats |