tracktables
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see tracktables.
Build IGV tracks and HTML reports
Bioconductor version: 3.9
Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.
Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang
Maintainer: Tom Carroll <tc.infomatics at gmail.com>
Citation (from within R, enter
citation("tracktables")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tracktables")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tracktables")| Creating IGV HTML reports with tracktables | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ReportWriting, Sequencing, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.0.0) |
| Imports | IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tracktables_1.18.0.tar.gz |
| Windows Binary | tracktables_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | tracktables_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tracktables |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tracktables |
| Bioc Package Browser | https://code.bioconductor.org/browse/tracktables/ |
| Package Short Url | https://bioconductor.org/packages/tracktables/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |