switchde
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see switchde.
Switch-like differential expression across single-cell trajectories
Bioconductor version: 3.9
Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.
Author: Kieran Campbell [aut, cre]
Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>
Citation (from within R, enter
citation("switchde")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("switchde")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("switchde")| An overview of the switchde package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4), SingleCellExperiment |
| Imports | SummarizedExperiment, dplyr, ggplot2, methods, stats |
| System Requirements | |
| URL | https://github.com/kieranrcampbell/switchde |
| Bug Reports | https://github.com/kieranrcampbell/switchde |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | switchde_1.10.0.tar.gz |
| Windows Binary | switchde_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | switchde_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/switchde |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/switchde |
| Bioc Package Browser | https://code.bioconductor.org/browse/switchde/ |
| Package Short Url | https://bioconductor.org/packages/switchde/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |