statTarget
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see statTarget.
Statistical Analysis of Molecular Profiles
Bioconductor version: 3.9
A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.
Author: Hemi Luan
Maintainer: Hemi Luan <hemi.luan at gmail.com>
citation("statTarget")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("statTarget")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("statTarget")| QC_free approach with Combat method | HTML | R Script |
| statTarget2 for pathway analysis | HTML | R Script |
| statTarget2 On using the Graphical User Interface | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect, ComBat, DifferentialExpression, GUI, ImmunoOncology, Lipidomics, Machine Learning, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, Proteomics, QC-RFSC, QC-RLSC, QualityControl, Software, Visualization |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | LGPL (>= 3) |
| Depends | R (>= 3.3.0) |
| Imports | randomForest, plyr, pdist, ROC, utils, grDevices, graphics, rrcov, stats, pls, impute |
| System Requirements | |
| URL | https://stattarget.github.io |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, gWidgets2, gWidgets2RGtk2, RGtk2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | statTarget_1.14.0.tar.gz |
| Windows Binary | statTarget_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | statTarget_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/statTarget |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/statTarget |
| Bioc Package Browser | https://code.bioconductor.org/browse/statTarget/ |
| Package Short Url | https://bioconductor.org/packages/statTarget/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |