spkTools
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see spkTools.
Methods for Spike-in Arrays
Bioconductor version: 3.9
The package contains functions that can be used to compare expression measures on different array platforms.
Author: Matthew N McCall <mccallm at gmail.com>, Rafael A Irizarry <rafa at jhu.edu>
Maintainer: Matthew N McCall <mccallm at gmail.com>
Citation (from within R, enter
citation("spkTools")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("spkTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spkTools")| spkTools: Spike-in Data Analysis and Visualization | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Software, Technology |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (15 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.7.0), Biobase(>= 2.5.5) |
| Imports | Biobase(>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils |
| System Requirements | |
| URL | http://bioconductor.org |
See More
| Suggests | xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | spkTools_1.40.0.tar.gz |
| Windows Binary | spkTools_1.40.0.zip |
| Mac OS X 10.11 (El Capitan) | spkTools_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spkTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spkTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/spkTools/ |
| Package Short Url | https://bioconductor.org/packages/spkTools/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |