sigPathway
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigPathway.
Pathway Analysis
Bioconductor version: 3.9
Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)
Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)
Maintainer: Weil Lai <wlai at alum.mit.edu>
citation("sigPathway")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sigPathway")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigPathway")| sigPathway | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, MultipleComparison, Software |
| Version | 1.52.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10) |
| Imports | |
| System Requirements | |
| URL | http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html |
See More
| Suggests | hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12) |
| Linking To | |
| Enhances | |
| Depends On Me | tRanslatome |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sigPathway_1.52.0.tar.gz |
| Windows Binary | sigPathway_1.52.0.zip |
| Mac OS X 10.11 (El Capitan) | sigPathway_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sigPathway |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sigPathway |
| Bioc Package Browser | https://code.bioconductor.org/browse/sigPathway/ |
| Package Short Url | https://bioconductor.org/packages/sigPathway/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |