savR
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see savR.
Parse and analyze Illumina SAV files
Bioconductor version: 3.9
Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.
Author: R. Brent Calder
Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>
Citation (from within R, enter
citation("savR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("savR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("savR")| Using savR | R Script | |
| Reference Manual |
Details
| biocViews | Sequencing, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | AGPL-3 |
| Depends | ggplot2 |
| Imports | methods, reshape2, scales, gridExtra, XML |
| System Requirements | |
| URL | https://github.com/bcalder/savR |
| Bug Reports | https://github.com/bcalder/savR/issues |
See More
| Suggests | Cairo, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | savR_1.22.0.tar.gz |
| Windows Binary | savR_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | savR_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/savR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/savR |
| Bioc Package Browser | https://code.bioconductor.org/browse/savR/ |
| Package Short Url | https://bioconductor.org/packages/savR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |