qckitfastq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see qckitfastq.
FASTQ Quality Control
Bioconductor version: 3.9
Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.
Author: Wenyue Xing [aut], August Guang [aut, cre]
Maintainer: August Guang <august.guang at gmail.com>
Citation (from within R, enter
citation("qckitfastq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qckitfastq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qckitfastq")| Quality control analysis and visualization using qckitfastq | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | QualityControl, Sequencing, Software |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | magrittr, ggplot2, dplyr, seqTools, zlibbioc, data.table, reshape2, grDevices, graphics, stats, utils, Rcpp, rlang, RSeqAn |
| System Requirements | GNU make |
| URL |
See More
| Suggests | knitr, rmarkdown, kableExtra, testthat |
| Linking To | Rcpp, RSeqAn |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | qckitfastq_1.0.1.tar.gz |
| Windows Binary | qckitfastq_1.0.1.zip |
| Mac OS X 10.11 (El Capitan) | qckitfastq_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qckitfastq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qckitfastq |
| Bioc Package Browser | https://code.bioconductor.org/browse/qckitfastq/ |
| Package Short Url | https://bioconductor.org/packages/qckitfastq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |