psygenet2r
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see psygenet2r.
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
Bioconductor version: 3.9
Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.
Author: Alba Gutierrez-Sacristan [aut, cre], Carles Hernandez-Ferrer [aut], Jaun R. Gonzalez [aut], Laura I. Furlong [aut]
Maintainer: Alba Gutierrez-Sacristan <alba.gutierrez at upf.edu>
citation("psygenet2r")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("psygenet2r")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("psygenet2r")| psygenet2r: An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders | HTML | R Script |
| psygenet2r: Case study on GWAS on bipolar disorder | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BiomedicalInformatics, DataImport, DataRepresentation, Genetics, Infrastructure, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4) |
| Imports | stringr, RCurl, igraph, ggplot2, reshape2, grid, parallel, biomaRt, BgeeDB, topGO, BiocManager, Biobase, labeling, GO.db |
| System Requirements | |
| URL |
See More
| Suggests | testthat, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | psygenet2r_1.16.0.tar.gz |
| Windows Binary | psygenet2r_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | psygenet2r_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/psygenet2r |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/psygenet2r |
| Bioc Package Browser | https://code.bioconductor.org/browse/psygenet2r/ |
| Package Short Url | https://bioconductor.org/packages/psygenet2r/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |