pogos
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see pogos.
PharmacOGenomics Ontology Support
Bioconductor version: 3.9
Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.
Author: Vince Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("pogos")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pogos")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pogos")| pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology | HTML | R Script |
| Reference Manual |
Details
| biocViews | ImmunoOncology, Pharmacogenomics, PooledScreens, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1) |
| Imports | methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics |
| System Requirements | |
| URL |
See More
| Suggests | knitr, DT, ontologyPlot, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BiocOncoTK |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pogos_1.4.0.tar.gz |
| Windows Binary | pogos_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | pogos_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pogos |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pogos |
| Bioc Package Browser | https://code.bioconductor.org/browse/pogos/ |
| Package Short Url | https://bioconductor.org/packages/pogos/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |