plethy
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see plethy.
R framework for exploration and analysis of respirometry data
Bioconductor version: 3.9
This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.
Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]
Maintainer: Daniel Bottomly <bottomly at ohsu.edu>
citation("plethy")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plethy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plethy")| plethy | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.1.0), methods, DBI (>= 0.5-1), RSQLite (>= 1.1), BiocGenerics, S4Vectors |
| Imports | Streamer, IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plethy_1.22.0.tar.gz |
| Windows Binary | plethy_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | plethy_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/plethy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plethy |
| Bioc Package Browser | https://code.bioconductor.org/browse/plethy/ |
| Package Short Url | https://bioconductor.org/packages/plethy/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |