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pathRender

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see pathRender.

Render molecular pathways


Bioconductor version: 3.9

build graphs from pathway databases, render them by Rgraphviz.

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pathRender")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathRender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathRender")
pathRender overview PDF R Script
pathway graphs colored by expression map PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, Pathways, Software, Visualization
Version 1.52.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL
Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods, stats4
Imports
System Requirements
URL http://www.bioconductor.org
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pathRender_1.52.0.tar.gz
Windows Binary pathRender_1.52.0.zip
Mac OS X 10.11 (El Capitan) pathRender_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pathRender
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pathRender
Bioc Package Browser https://code.bioconductor.org/browse/pathRender/
Package Short Url https://bioconductor.org/packages/pathRender/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive