panelcn.mops
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see panelcn.mops.
CNV detection tool for targeted NGS panel data
Bioconductor version: 3.9
CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.
Author: Verena Haunschmid, Gundula Povysil
Maintainer: Gundula Povysil <povysil at bioinf.jku.at>
Citation (from within R, enter
citation("panelcn.mops")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("panelcn.mops")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("panelcn.mops")| panelcn.mops: Manual for the R package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection |
| Version | 1.6.1 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 3.4), cn.mops, methods, utils, stats, graphics |
| Imports | GenomicRanges, Rsamtools, IRanges, S4Vectors, GenomeInfoDb, grDevices |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CopyNumberPlots |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | panelcn.mops_1.6.1.tar.gz |
| Windows Binary | panelcn.mops_1.6.1.zip |
| Mac OS X 10.11 (El Capitan) | panelcn.mops_1.6.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/panelcn.mops |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/panelcn.mops |
| Bioc Package Browser | https://code.bioconductor.org/browse/panelcn.mops/ |
| Package Short Url | https://bioconductor.org/packages/panelcn.mops/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |