openPrimeRui
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see openPrimeRui.
Shiny Application for Multiplex PCR Primer Design and Analysis
Bioconductor version: 3.9
A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.
Author: Matthias Döring [aut, cre], Nico Pfeifer [aut]
Maintainer: Matthias Döring <mdoering at mpi-inf.mpg.de>
citation("openPrimeRui")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("openPrimeRui")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("openPrimeRui")| openPrimeRui | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, Technology |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.4.0), openPrimeR(>= 0.99.0) |
| Imports | shiny (>= 1.0.2), shinyjs (>= 0.9), shinyBS (>= 0.61), DT (>= 0.2), rmarkdown (>= 1.0) |
| System Requirements | |
| URL |
See More
| Suggests | knitr (>= 1.13) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | openPrimeRui_1.6.0.tar.gz |
| Windows Binary | openPrimeRui_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | openPrimeRui_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/openPrimeRui |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/openPrimeRui |
| Bioc Package Browser | https://code.bioconductor.org/browse/openPrimeRui/ |
| Package Short Url | https://bioconductor.org/packages/openPrimeRui/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |