omicsPrint
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see omicsPrint.
Cross omic genetic fingerprinting
Bioconductor version: 3.9
omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).
Author: Maarten van Iterson [aut], Davy Cats [cre]
Maintainer: Davy Cats <davycats.dc at gmail.com>
citation("omicsPrint")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("omicsPrint")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("omicsPrint")| omicsPrint: detection of data linkage errors in multiple omics studies | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5), MASS |
| Imports | methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | omicsPrint_1.4.0.tar.gz |
| Windows Binary | omicsPrint_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | omicsPrint_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/omicsPrint |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/omicsPrint |
| Bioc Package Browser | https://code.bioconductor.org/browse/omicsPrint/ |
| Package Short Url | https://bioconductor.org/packages/omicsPrint/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |