miRmine
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see miRmine.
Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment
Bioconductor version: 3.9
miRmine database is a collection of expression profiles from different publicly available miRNA-seq datasets, Panwar et al (2017) miRmine: A Database of Human miRNA Expression, prepared with this data package as RangedSummarizedExperiment.
Author: Dusan Randjelovic [aut, cre]
Maintainer: Dusan Randjelovic <dusan.randjelovic at sbgenomics.com>
citation("miRmine")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRmine")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miRmine")| miRmine | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExpressionData, Homo_sapiens_Data, RNASeqData, SequencingData, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.4), SummarizedExperiment |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, DESeq2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miRmine_1.6.0.tar.gz |
| Windows Binary | miRmine_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | miRmine_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/miRmine |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miRmine |
| Bioc Package Browser | https://code.bioconductor.org/browse/miRmine/ |
| Package Short Url | https://bioconductor.org/packages/miRmine/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |