miRNApath
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see miRNApath.
miRNApath: Pathway Enrichment for miRNA Expression Data
Bioconductor version: 3.9
This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.
Author: James M. Ward <jmw86069 at gmail.com> with contributions from Yunling Shi, Cindy Richards, John P. Cogswell
Maintainer: James M. Ward <jmw86069 at gmail.com>
citation("miRNApath")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRNApath")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miRNApath")| miRNApath: Pathway Enrichment for miRNA Expression Data | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, DifferentialExpression, NetworkEnrichment, Pathways, Software, miRNA |
| Version | 1.44.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (15.5 years) |
| License | LGPL-2.1 |
| Depends | methods, R (>= 2.7.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miRNApath_1.44.0.tar.gz |
| Windows Binary | miRNApath_1.44.0.zip |
| Mac OS X 10.11 (El Capitan) | miRNApath_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/miRNApath |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miRNApath |
| Bioc Package Browser | https://code.bioconductor.org/browse/miRNApath/ |
| Package Short Url | https://bioconductor.org/packages/miRNApath/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |