methVisual
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see methVisual.
Methods for visualization and statistics on DNA methylation data
Bioconductor version: 3.9
The package 'methVisual' allows the visualization of DNA methylation data after bisulfite sequencing.
Author: A. Zackay, C. Steinhoff
Maintainer: Arie Zackay <arie.zackay at mail.huji.ac.il>
Citation (from within R, enter
citation("methVisual")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methVisual")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methVisual")| Introduction to methVisual | R Script | |
| Reference Manual |
Details
| biocViews | Classification, Clustering, DNAMethylation, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.11.0), Biostrings(>= 2.4.8), plotrix, gsubfn, grid, sqldf |
| Imports | Biostrings, ca, graphics, grDevices, grid, gridBase, IRanges, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | methVisual_1.36.0.tar.gz |
| Windows Binary | methVisual_1.36.0.zip |
| Mac OS X 10.11 (El Capitan) | methVisual_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/methVisual |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/methVisual |
| Bioc Package Browser | https://code.bioconductor.org/browse/methVisual/ |
| Package Short Url | https://bioconductor.org/packages/methVisual/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |