manta
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see manta.
Microbial Assemblage Normalized Transcript Analysis
Bioconductor version: 3.9
Tools for robust comparative metatranscriptomics.
Author: Ginger Armbrust, Adrian Marchetti
Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>
Citation (from within R, enter
citation("manta")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("manta")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("manta")| manta | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Visualization |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | Artistic-2.0 |
| Depends | R (>= 1.8.0), methods, edgeR(>= 2.5.13) |
| Imports | Hmisc, caroline (>= 0.6.6) |
| System Requirements | |
| URL | http://manta.ocean.washington.edu/ |
See More
| Suggests | RSQLite, plotrix |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | manta_1.30.0.tar.gz |
| Windows Binary | manta_1.30.0.zip |
| Mac OS X 10.11 (El Capitan) | manta_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/manta |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/manta |
| Bioc Package Browser | https://code.bioconductor.org/browse/manta/ |
| Package Short Url | https://bioconductor.org/packages/manta/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |