makecdfenv
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see makecdfenv.
CDF Environment Maker
Bioconductor version: 3.9
This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.
Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>
Maintainer: James W. MacDonald <jmacdon at u.washington.edu>
citation("makecdfenv")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("makecdfenv")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("makecdfenv")| makecdfenv primer | R Script | |
| Reference Manual |
Details
| biocViews | DataImport, OneChannel, Preprocessing, Software |
| Version | 1.60.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.6.0), affyio |
| Imports | Biobase, affy, methods, stats, utils, zlibbioc |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | altcdfenvs |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | makecdfenv_1.60.0.tar.gz |
| Windows Binary | makecdfenv_1.60.0.zip |
| Mac OS X 10.11 (El Capitan) | makecdfenv_1.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/makecdfenv |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/makecdfenv |
| Bioc Package Browser | https://code.bioconductor.org/browse/makecdfenv/ |
| Package Short Url | https://bioconductor.org/packages/makecdfenv/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |