isomiRs
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see isomiRs.
Analyze isomiRs and miRNAs from small RNA-seq
Bioconductor version: 3.9
Characterization of miRNAs and isomiRs, clustering and differential expression.
Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut]
Maintainer: Lorena Pantano <lorena.pantano at gmail.com>
Citation (from within R, enter
citation("isomiRs")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("isomiRs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("isomiRs")| miRNA and isomiR analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Clustering, DifferentialExpression, ImmunoOncology, RNASeq, Software, miRNA |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5), DiscriMiner, SummarizedExperiment |
| Imports | AnnotationDbi, assertive.sets, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/lpantano/isomiRs/issues |
See More
| Suggests | knitr, org.Mm.eg.db, targetscan.Hs.eg.db, pheatmap, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | isomiRs_1.12.0.tar.gz |
| Windows Binary | isomiRs_1.12.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | isomiRs_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/isomiRs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/isomiRs |
| Bioc Package Browser | https://code.bioconductor.org/browse/isomiRs/ |
| Package Short Url | https://bioconductor.org/packages/isomiRs/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |