ipdDb
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ipdDb.
IPD IMGT/HLA and IPD KIR database for Homo sapiens
Bioconductor version: 3.9
All alleles from the IPD IMGT/HLA
Author: Steffen Klasberg
Maintainer: Steffen Klasberg <klasberg at dkms-lab.de>
citation("ipdDb")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ipdDb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ipdDb")| ipdDb | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, GenomicVariation, SequenceMatching, Software, VariantAnnotation |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), methods, AnnotationDbi(>= 1.43.1), AnnotationHub |
| Imports | Biostrings, GenomicRanges, RSQLite, DBI, IRanges, stats, assertthat |
| System Requirements | |
| URL | https://github.com/DKMS-LSL/ipdDb |
| Bug Reports | https://github.com/DKMS-LSL/ipdDb/issues/new |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ipdDb_1.2.0.tar.gz |
| Windows Binary | ipdDb_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | ipdDb_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ipdDb |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ipdDb |
| Bioc Package Browser | https://code.bioconductor.org/browse/ipdDb/ |
| Package Short Url | https://bioconductor.org/packages/ipdDb/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |