iASeq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see iASeq.
iASeq: integrating multiple sequencing datasets for detecting allele-specific events
Bioconductor version: 3.9
It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.
Author: Yingying Wei, Hongkai Ji
Maintainer: Yingying Wei <ywei at jhsph.edu>
Citation (from within R, enter
citation("iASeq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iASeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iASeq")| iASeq Vignette | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq, ImmunoOncology, RNASeq, SNP, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | GPL-2 |
| Depends | R (>= 2.14.1) |
| Imports | graphics, grDevices |
| System Requirements | |
| URL |
See More
| Suggests | |
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| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iASeq_1.28.0.tar.gz |
| Windows Binary | iASeq_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | iASeq_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iASeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iASeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/iASeq/ |
| Package Short Url | https://bioconductor.org/packages/iASeq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |