gQTLBase

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gQTLBase.

gQTLBase: infrastructure for eQTL, mQTL and similar studies

Installation

To install this package, start R (version "3.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gQTLBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gQTLBase")

gQTLBase infrastructure for eQTL archives	HTML	R Script
Reference Manual	PDF

Details

biocViews	Software
Version	1.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (9 years)
License	Artistic-2.0
Depends
Imports	GenomicRanges, methods, BatchJobs, BBmisc, S4Vectors, BiocGenerics, foreach, doParallel, bit, ff, rtracklayer, ffbase, GenomicFiles, SummarizedExperiment
System Requirements
URL

See More

Suggests	geuvStore2, knitr, rmarkdown, BiocStyle, RUnit, GGtools, Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack
Linking To
Enhances
Depends On Me
Imports Me	geuvStore2, gQTLstats, yriMulti
Suggests Me	parglms
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gQTLBase_1.16.0.tar.gz
Windows Binary	gQTLBase_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	gQTLBase_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gQTLBase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gQTLBase
Bioc Package Browser	https://code.bioconductor.org/browse/gQTLBase/
Package Short Url	https://bioconductor.org/packages/gQTLBase/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive