flowDensity
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowDensity.
Sequential Flow Cytometry Data Gating
Bioconductor version: 3.9
This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.
Author: Mehrnoush Malek,M. Jafar Taghiyar
Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>
Citation (from within R, enter
citation("flowDensity")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowDensity")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowDensity")| Automated alternative to the current manual gating practice | R Script | |
| Automated alternative to the current manual gating practice | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | Bioinformatics, Cancer, CellBiology, Clustering, DensityGating, FlowCytData, FlowCytometry, ImmunoOncology, Software, StemCells |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | flowCore, graphics, car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.20.5), methods, stats, grDevices |
| System Requirements | GEOS (>= 3.2.0);for building from source: GEOS from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by William Kyngesburye at http://www.kyngchaos.com/ may be used for source installs on OSX. |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ddPCRclust |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowDensity_1.18.0.tar.gz |
| Windows Binary | flowDensity_1.18.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | flowDensity_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowDensity |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowDensity |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowDensity/ |
| Package Short Url | https://bioconductor.org/packages/flowDensity/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |