esetVis
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see esetVis.
Visualizations of expressionSet Bioconductor object
Bioconductor version: 3.9
Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.
Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>
Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>
citation("esetVis")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("esetVis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("esetVis")| esetVis package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices, methods |
| System Requirements | |
| URL |
See More
| Suggests | ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | esetVis_1.10.0.tar.gz |
| Windows Binary | esetVis_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | esetVis_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/esetVis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/esetVis |
| Bioc Package Browser | https://code.bioconductor.org/browse/esetVis/ |
| Package Short Url | https://bioconductor.org/packages/esetVis/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |