ctsGE
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ctsGE.
Clustering of Time Series Gene Expression data
Bioconductor version: 3.9
Methodology for supervised clustering of potentially many predictor variables, such as genes etc., in time series datasets Provides functions that help the user assigning genes to predefined set of model profiles.
Author: Michal Sharabi-Schwager [aut, cre], Ron Ophir [aut]
Maintainer: Michal Sharabi-Schwager <michalsharabi at gmail.com>
citation("ctsGE")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ctsGE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ctsGE")| ctsGE Package | HTML | R Script |
| Reference Manual |
Details
| biocViews | Bayesian, Clustering, DifferentialExpression, GeneExpression, GeneSetEnrichment, Genetics, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.2) |
| Imports | ccaPP, ggplot2, limma, reshape2, shiny, stats, stringr, utils |
| System Requirements | |
| URL | https://github.com/michalsharabi/ctsGE |
| Bug Reports | https://github.com/michalsharabi/ctsGE/issues |
See More
| Suggests | BiocStyle, dplyr, DT, GEOquery, knitr, pander, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ctsGE_1.10.0.tar.gz |
| Windows Binary | ctsGE_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | ctsGE_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ctsGE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ctsGE |
| Bioc Package Browser | https://code.bioconductor.org/browse/ctsGE/ |
| Package Short Url | https://bioconductor.org/packages/ctsGE/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |